PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR94077.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 354aa MW: 40663.4 Da PI: 4.9466

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR94077.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.9	1.5e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++++G g+W+++++ g+ R++k+c++rw +yl RWR94077.1 14 KGLWSPEEDEKLFTHITKFGVGCWSAVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	46.2	1e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eE++l++ +++ lG++ W+ Ia+ ++ gRt++++k+ w++ RWR94077.1 67 RGSFSQEEEDLIISLHEVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 899*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLFTHIT KFGVGCWSAV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SQEEEDLIIS LHEVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQQG 120 IDPSTHKPLN ETKEEETKCI EEALQPQSKK LRTFSTSELN QSALIFDTRF DDLTNNSLFN 180 ENFLRKPAFD PFPLFEFQAG VDPIVSNSTN LFQVQKSYRP DQTQMEMNSD FGFSLPPNLS 240 FSDYSNVTDI SDGSTTRSPL FMNEAGESSI SINTSNRNNC IEFQVNDVIE NMGMSWDSGS 300 KLESLFQFHL NAIKSQELNS CSWQEQQNIQ STDDYSQFPL TSLPEDLRDI FEQI

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLFTHIT KFGVGCWSAV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SQEEEDLIIS LHEVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQQG  120
IDPSTHKPLN ETKEEETKCI EEALQPQSKK LRTFSTSELN QSALIFDTRF DDLTNNSLFN  180
ENFLRKPAFD PFPLFEFQAG VDPIVSNSTN LFQVQKSYRP DQTQMEMNSD FGFSLPPNLS  240
FSDYSNVTDI SDGSTTRSPL FMNEAGESSI SINTSNRNNC IEFQVNDVIE NMGMSWDSGS  300
KLESLFQFHL NAIKSQELNS CSWQEQQNIQ STDDYSQFPL TSLPEDLRDI FEQI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	LKKKLRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.3	6e-84	MYB family protein