PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR87858.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 84aa    MW: 9581.13 Da    PI: 10.2853
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR87858.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.61.8e-291059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                rien   rqvtfskRrng+lKKA+ELSvLCd+eva+++fs+tg+lye++s
  RWR87858.1 10 RIENAASRQVTFSKRRNGLLKKAFELSVLCDVEVALMVFSPTGRLYEFAS 59
                8***********************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    
MVRGKTQLRR IENAASRQVT FSKRRNGLLK KAFELSVLCD VEVALMVFSP TGRLYEFASA  60
GWNPPSTPPL EFENFTQKVE KMQC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-33MIKC_MADS family protein