PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR87578.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

TCP

Protein Properties

Length: 389aa MW: 40938.4 Da PI: 9.1123

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR87578.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.9	6.4e-37	70	183	3	113
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..kaaksaaksk 98 +++++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+p+i ++tgt++++a ++ +++ + ++++s + + ++s++k+k RWR87578.1 70 AQRRSSKDRHTKVEGRGRRIRMPAACAARVFQLTRELGHKSDGETIRWLLEHAEPSIVAATGTGTIPAIATtIDGTLKIPTQSPSLTveEGEASKNKRK 168 68999**********************************************************999996665444444444444444433333333444 PP TCP 99 ksqksaasalnlake 113 ++++ aa+a ++ k RWR87578.1 169 RTTAAAAAAAAVEKA 183 444444444444443 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MEEEGKSSSS SEEGFSSSPL PTSTQQPQPP PQPSSISTQQ TAAQQLICMK TETATDDRRI 60 QYVPMKNPLA QRRSSKDRHT KVEGRGRRIR MPAACAARVF QLTRELGHKS DGETIRWLLE 120 HAEPSIVAAT GTGTIPAIAT TIDGTLKIPT QSPSLTVEEG EASKNKRKRT TAAAAAAAAV 180 EKASMSSGLA PIAPVGVGPT NPIMATQTVW MIPPYSGIGG PSNQVWTFPA QATPLFNLSG 240 RPISTVFSAV PGLNLASAVE IQALPSSSSS ASSSKQELQL MGSSATELTI PLLYLSSSPS 300 LFSLPKPVNP PSSRNLSRSA DLTASTPYAN PSPRLSPPSP AFILPTPSPD PSQPSHPLDP 360 PIIFSSPSPH HRIVDLVLDL GATPVVMDP

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MEEEGKSSSS SEEGFSSSPL PTSTQQPQPP PQPSSISTQQ TAAQQLICMK TETATDDRRI  60
QYVPMKNPLA QRRSSKDRHT KVEGRGRRIR MPAACAARVF QLTRELGHKS DGETIRWLLE  120
HAEPSIVAAT GTGTIPAIAT TIDGTLKIPT QSPSLTVEEG EASKNKRKRT TAAAAAAAAV  180
EKASMSSGLA PIAPVGVGPT NPIMATQTVW MIPPYSGIGG PSNQVWTFPA QATPLFNLSG  240
RPISTVFSAV PGLNLASAVE IQALPSSSSS ASSSKQELQL MGSSATELTI PLLYLSSSPS  300
LFSLPKPVNP PSSRNLSRSA DLTASTPYAN PSPRLSPPSP AFILPTPSPD PSQPSHPLDP  360
PIIFSSPSPH HRIVDLVLDL GATPVVMDP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	8e-41	TCP family protein