PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80573.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

AP2

Protein Properties

Length: 405aa MW: 45645.5 Da PI: 7.6325

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80573.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.4	1.2e-15	66	125	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g RWR80573.1 66 SRFRGVSRHRWTGRYEAHLWDkGSWNVaqkKKgKQVYLGAYDEEEAAARAYDLAALKYWG 125 789****************888855655447***********************98 PP
2	AP2	51.1	3.2e-16	168	219	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g RWR80573.1 168 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAAAYDIAAIEYRG 219 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MEGVLVKREG NSGRRRAGIL ENESETPKCS KRRRREPVVA AASGEDKGEL QDPSTTNTTS 60 TVKRSSRFRG VSRHRWTGRY EAHLWDKGSW NVAQKKKGKQ VYLGAYDEEE AAARAYDLAA 120 LKYWGPTTFT NFPVSDYEKE LEIMHGISKE EYLATLRRKS SGFSRGVSKY RGVARHHHNG 180 RWEARIGRVF GNKYLYLGTY STQEEAAAAY DIAAIEYRGI NAVTNFDLST YIRWLRPGSS 240 AFITSKEPRV DSENQAVTSS TFPPKEYPQP FYNYNTLTTD DMGDFPPKQE YQTGQISSGT 300 DRSSPRTALS VLLRSSIFRE LVEKNSNAGS DSEVEGDEIK NQQQLGNDEE FGLTYLDGIA 360 NMPYICPSSG NTLPANIELQ EENASYYERP VQSLWSSVLS MSNIQ

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MEGVLVKREG NSGRRRAGIL ENESETPKCS KRRRREPVVA AASGEDKGEL QDPSTTNTTS  60
TVKRSSRFRG VSRHRWTGRY EAHLWDKGSW NVAQKKKGKQ VYLGAYDEEE AAARAYDLAA  120
LKYWGPTTFT NFPVSDYEKE LEIMHGISKE EYLATLRRKS SGFSRGVSKY RGVARHHHNG  180
RWEARIGRVF GNKYLYLGTY STQEEAAAAY DIAAIEYRGI NAVTNFDLST YIRWLRPGSS  240
AFITSKEPRV DSENQAVTSS TFPPKEYPQP FYNYNTLTTD DMGDFPPKQE YQTGQISSGT  300
DRSSPRTALS VLLRSSIFRE LVEKNSNAGS DSEVEGDEIK NQQQLGNDEE FGLTYLDGIA  360
NMPYICPSSG NTLPANIELQ EENASYYERP VQSLWSSVLS MSNIQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	35	RRRAGILENESETPKCSKRRRR
2	27	33	PKCSKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	5e-77	AP2 family protein