PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR80060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 257aa MW: 28444.5 Da PI: 4.5944 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 29.4 | 1e-09 | 40 | 72 | 18 | 50 |
HHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 18 ngilKKAeELSvLCdaevaviifsstgklyeys 50 +g++KKA+ELS + e+a+i fs gk++++ RWR80060.1 40 AGLFKKAQELSKFSGCEIAIIAFSGVGKFFTFG 72 79*****************************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence |
MPLKIRKGRE SSRTLLPPPV LPTQLPPVPR QRRFGARSGA GLFKKAQELS KFSGCEIAII 60 AFSGVGKFFT FGSSDFDHII SRYLSITTTS TFTSPVKGLQ VECQPPNHLE HHVMEVSNQE 120 FEQENLFISQ THQMVSSSSS ITTAELPPTV PEHSSEHDLT GVHPWNGWDQ FYSQFDERGG 180 EEWNECGFDI GPASAPTFFQ SVQEDEQYPS GSSFFQPAEE GYGCGLPSFH SLTPNQADEG 240 AILPFDDGGY GFESSWL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 2e-08 | MIKC_MADS family protein |