PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR77937.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

AP2

Protein Properties

Length: 669aa MW: 73563.9 Da PI: 6.931

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR77937.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39	2.1e-12	322	378	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g RWR77937.1 322 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 378 78*****************77776664346655.77****************98 PP
2	AP2	45.6	1.7e-14	423	472	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g RWR77937.1 423 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 472 9*************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence
MKPMNNNNWL GFSLSPHMNM ELSADPHHHH HHHHETQTTA ASAAPAAASS APASFFLPPN 60 HLNSSGICYG TEPGNGGLYS QLSVMPLKSD GSLCIMEALS RSQQQGMVFS SSPKLEDFMG 120 THQYGNNDRE TMSLSLDSSN LYYQQNPEPE NNRQGLLQPY RQLIQAQQHP YFQPLQEGMC 180 SGVTGHEMFQ TSMEEGPKVH QLAGCSLQLP PVAEDGIPGL KNWATRLNTP NHSLGEKINA 240 FLGEEGSGSA SGGAMGYGDL QSLSLSMSPG SQSSYVAATQ QASPPGIAEC VAMDSKKRGN 300 GKGGHRQPVH RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ TRKGRQGGYD 360 MEEKAARAYD LAALKYWGPS THINFPLENY HDQLEEMKNM TRQEYVAHLR RKSSGFSRGA 420 SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGVNAVTNFD 480 ITRYDVERII SSSTLLAGEL AKRNKEIETT NEAIEHHTSA QNSSQEPELA EEINSGSDWK 540 MVLYQSSPQQ PPTVDQLDQK PMGDSNYRSP LLSSLHDLIG MDTINSAEGI DDSTKMTTAH 600 LSNASSMVTS LSSPGEGSPD RMGLPMLFAK SPASKIISSS PLNSWIPSRQ LRPAIPMAHM 660 PVFAAWSDA

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence

MKPMNNNNWL GFSLSPHMNM ELSADPHHHH HHHHETQTTA ASAAPAAASS APASFFLPPN  60
HLNSSGICYG TEPGNGGLYS QLSVMPLKSD GSLCIMEALS RSQQQGMVFS SSPKLEDFMG  120
THQYGNNDRE TMSLSLDSSN LYYQQNPEPE NNRQGLLQPY RQLIQAQQHP YFQPLQEGMC  180
SGVTGHEMFQ TSMEEGPKVH QLAGCSLQLP PVAEDGIPGL KNWATRLNTP NHSLGEKINA  240
FLGEEGSGSA SGGAMGYGDL QSLSLSMSPG SQSSYVAATQ QASPPGIAEC VAMDSKKRGN  300
GKGGHRQPVH RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ TRKGRQGGYD  360
MEEKAARAYD LAALKYWGPS THINFPLENY HDQLEEMKNM TRQEYVAHLR RKSSGFSRGA  420
SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGVNAVTNFD  480
ITRYDVERII SSSTLLAGEL AKRNKEIETT NEAIEHHTSA QNSSQEPELA EEINSGSDWK  540
MVLYQSSPQQ PPTVDQLDQK PMGDSNYRSP LLSSLHDLIG MDTINSAEGI DDSTKMTTAH  600
LSNASSMVTS LSSPGEGSPD RMGLPMLFAK SPASKIISSS PLNSWIPSRQ LRPAIPMAHM  660
PVFAAWSDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-122	AP2 family protein