PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR72342.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 539aa    MW: 59183.6 Da    PI: 5.8946
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR72342.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS327.92e-1001745373374
        GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 e+L+++Ae+v+s+dl+la+a+Larl+++ + p+g+p+qR+a+yf+eAL++ ++r  ++l   ++p e     + +++ a+k+fse+sP+++f+++taNq
  RWR72342.1 174 EQLIRAAECVDSNDLSLAHAILARLNHQlQFPTGKPLQRAAFYFKEALESLILR--PSLKIVFSPFE-----TLQKIGAYKAFSELSPVFQFANFTANQ 265
                 79************************99899***********************..55554344444.....5799*********************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRp......egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                 aIleav+g+ ++H+iDf+i+ G+QWp+L+q++a R        +ppslRiT++++   +++ e++  g+ L++fA+e+g++f++++++  r+e+l l +
  RWR72342.1 266 AILEAVSGSGMIHVIDFEIGLGGQWPPLMQEIAMRCrdsarvLPPPSLRITAIVD---EESMETKLAGDVLRSFAREIGIRFRIEFVHLARFETLALAA 361
                 *********************************9985454444599*********...4688999********************************** PP

        GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpres..eerikvE 286
                 + + +gEa+aV+l  +++r   +  ++      +L++++++sP++ v+v+ e+ ++++    sF + f++ le y++l++sl+a  p  s  e+ + +E
  RWR72342.1 362 IGFVEGEAVAVSLTPSIFRRI-DGPNT----AGFLRTLRRISPRIAVFVDAECRRDGSgapaSFRRSFIDGLELYAVLLESLDAASPMGSsaEQIRRIE 455
                 ********************9.33333....46*********************955547889*******************988888876688899** PP

        GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 r+ll+++i+ +va++g +      tl  Wre l+ +G++p+plse a++qa++llr+++  g++v +++ s++l+W++r+Lv++SaWr
  RWR72342.1 456 RFLLRPRISRAVAAAGVR------TLPPWRELLSGSGMSPIPLSELAESQAECLLRRIPLSGFHVAKRESSMLLCWQGRELVATSAWR 537
                 ****************98......9**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    
MKPLIDSSQN HQFPLSKPLS YTLASPNAAL NTTQPISYEP TSVLDLRSSP ASAARRQESV  60
AGIPPVSAAL SDEPSSLFSV DEWDDSLLWS LGEKDDSAPD LKCIPHFAPP ETPNPNLPPF  120
PSSDSFDSSS SHHLIFPDLN PSAFPSPNPC FFSEKSNLSQ SPLESPSFDR LQLEQLIRAA  180
ECVDSNDLSL AHAILARLNH QLQFPTGKPL QRAAFYFKEA LESLILRPSL KIVFSPFETL  240
QKIGAYKAFS ELSPVFQFAN FTANQAILEA VSGSGMIHVI DFEIGLGGQW PPLMQEIAMR  300
CRDSARVLPP PSLRITAIVD EESMETKLAG DVLRSFAREI GIRFRIEFVH LARFETLALA  360
AIGFVEGEAV AVSLTPSIFR RIDGPNTAGF LRTLRRISPR IAVFVDAECR RDGSGAPASF  420
RRSFIDGLEL YAVLLESLDA ASPMGSSAEQ IRRIERFLLR PRISRAVAAA GVRTLPPWRE  480
LLSGSGMSPI PLSELAESQA ECLLRRIPLS GFHVAKRESS MLLCWQGREL VATSAWRCC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-107GRAS family protein