PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RDY04776.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 494aa MW: 54011.1 Da PI: 4.6265 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.9 | 9.6e-10 | 158 | 180 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C f+++tG Ck+G +CkF+H+ RDY04776.1 158 EDCAFYLKTGNCKFGFNCKFNHP 180 89********************9 PP | |||||||
2 | zf-CCCH | 30 | 9.1e-10 | 205 | 226 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 +C++++r+G Ck+G CkF+H RDY04776.1 205 TECKYYLRSGGCKFGKACKFNH 226 68******************** PP | |||||||
3 | zf-CCCH | 38.7 | 1.6e-12 | 250 | 273 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C++++rtG Ck+G++CkF+H+ RDY04776.1 250 EKECHYYMRTGSCKFGANCKFNHP 273 679********************9 PP | |||||||
4 | zf-CCCH | 29.3 | 1.4e-09 | 384 | 410 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++CkF+H++ RDY04776.1 384 PGEPECSYFLKTGDCKFKSNCKFHHPK 410 5799*********************96 PP | |||||||
5 | zf-CCCH | 33.3 | 8.1e-11 | 432 | 455 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C +++r+G Ck+G+ CkF H+ RDY04776.1 432 QNVCTYYSRYGLCKFGPACKFDHP 455 568********************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 494 aa Download sequence |
MEPFESESVS SSTKDPQLGV PSSPVHPLDH DPQPSDLNHV TQVDDALGLG EELQNKLDLK 60 DGDETENKGS NLEDGGENLS DEAAAPEDGK GEGCDDVVVV GGDDDDGCNG GDEGCECIEN 120 VNDESESDKV DGDVDGVENR DERSSGRAQQ YPLRPEAEDC AFYLKTGNCK FGFNCKFNHP 180 LRRKNQARKE NEGEREEQAE RSEQTECKYY LRSGGCKFGK ACKFNHTKGK YSASPIVDLN 240 FLGLPIRVGE KECHYYMRTG SCKFGANCKF NHPDPTAVGG GDSPSGYGNG SSISLQGVSQ 300 SSISQWSSTR TLNESTPFVP VILSPNPGVS PRSSEWNGYQ APVYLSERSL HPPSTYVINN 360 PAMETNVYMH HPKQMQVEEF PERPGEPECS YFLKTGDCKF KSNCKFHHPK NRIARLPPCN 420 LSDKGLPLRP DQNVCTYYSR YGLCKFGPAC KFDHPINPPP STMPGLDQQS SYTNSASVDV 480 AENGGASDGN QQSV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-120 | C3H family protein |