PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g989540.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 221aa MW: 25127.9 Da PI: 4.8944 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.6 | 1.4e-22 | 16 | 59 | 8 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr gi KKA ELSvLC+ evav+ifs tgkl++yss Pd.00g989540.m01 16 ARQVTFSKRRRGISKKAAELSVLCESEVAVVIFSATGKLFDYSS 59 69****************************************96 PP | |||||||
2 | K-box | 35.2 | 5.2e-13 | 86 | 165 | 14 | 94 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 + +++ kL ke+e+ r++R+++GedL++L+l eL +Le+ +e l ++ ++K+el+++ i l kk el e+n+++ Pd.00g989540.m01 86 LQLENENRIKLSKELEKN-RQLRQMKGEDLQELDLDELLKLEHLVEATLVRVMETKEELIMSDIVALEKKGTELVEANNQM 165 233333334555555553.677********************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence |
MMRENIKIKK IDYLPARQVT FSKRRRGISK KAAELSVLCE SEVAVVIFSA TGKLFDYSSS 60 SIKDVIEWYK MRTNGVEKSD EESLELQLEN ENRIKLSKEL EKNRQLRQMK GEDLQELDLD 120 ELLKLEHLVE ATLVRVMETK EELIMSDIVA LEKKGTELVE ANNQMVMLRE RMVMLSKRNT 180 GPALVEPSES ATSTSCNSAL SLSLEDDCSD DVILSLKPGR P |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 1e-39 | MIKC_MADS family protein |