PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g878410.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 440aa MW: 49335.3 Da PI: 6.0521

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g878410.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	75.7	3.5e-24	88	131	8	51
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr gi+KKAeELSvLC+ evav+ifs tgkl++yss Pd.00g878410.m01 88 ARQVTFSKRRRGIFKKAEELSVLCESEVAVVIFSATGKLFDYSS 131 69****************************************96 PP
2	K-box	49.8	1.5e-17	163	241	19	97
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +++ +L ke+e+ r++R++ GedLe+L++ eLq+Leq ++ sl ++ ++K+el++++i l +k el e+n++Lr++ Pd.00g878410.m01 163 ENHIRLTKELEEKSRQLRQMRGEDLEELNIDELQKLEQLVDASLGRVIETKEELIMSEIMALERKGAELVEANNQLRQR 241 34457888888888***************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MPHFLLSRYK INGGDRIYKL QVHLSLSICS GFLPSFPKRH REAAIFLSHS LSFSENTRTS 60 DPGTPQKGGM VKTMRKKIKI KKIDYLPARQ VTFSKRRRGI FKKAEELSVL CESEVAVVIF 120 SATGKLFDYS SSSTKDVVER YKAHTNGVEK SDEPSVELQL EIENHIRLTK ELEEKSRQLR 180 QMRGEDLEEL NIDELQKLEQ LVDASLGRVI ETKEELIMSE IMALERKGAE LVEANNQLRQ 240 RMLSRGNIGP ALVEPERLIN NIGGGGEEGM SSESATNATI SSCSSGLSLS LEDDCSDVTL 300 ALKLGSEKTC LGFFYGATIR YERQITIVDE GGIHALVIDN DGKIVPSEFG NLLRSLGVNP 360 TQAQLKSIVD EEKLTAPFNF PHVLDLMGKH MKLTPFDRQL RDAFKVLDKD STGFVSVSEL 420 RHIITSIDEK LEPSEFDEWI

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MPHFLLSRYK INGGDRIYKL QVHLSLSICS GFLPSFPKRH REAAIFLSHS LSFSENTRTS  60
DPGTPQKGGM VKTMRKKIKI KKIDYLPARQ VTFSKRRRGI FKKAEELSVL CESEVAVVIF  120
SATGKLFDYS SSSTKDVVER YKAHTNGVEK SDEPSVELQL EIENHIRLTK ELEEKSRQLR  180
QMRGEDLEEL NIDELQKLEQ LVDASLGRVI ETKEELIMSE IMALERKGAE LVEANNQLRQ  240
RMLSRGNIGP ALVEPERLIN NIGGGGEEGM SSESATNATI SSCSSGLSLS LEDDCSDVTL  300
ALKLGSEKTC LGFFYGATIR YERQITIVDE GGIHALVIDN DGKIVPSEFG NLLRSLGVNP  360
TQAQLKSIVD EEKLTAPFNF PHVLDLMGKH MKLTPFDRQL RDAFKVLDKD STGFVSVSEL  420
RHIITSIDEK LEPSEFDEWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24540.1	3e-57	MIKC_MADS family protein