PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g878390.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 234aa MW: 26401 Da PI: 5.0243 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.5 | 2.3e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n rqvtfskRr gi+KKA ELSvLC+ evav+ifs tgkl++yss Pd.00g878390.m01 9 KKIDNLPARQVTFSKRRRGIFKKAAELSVLCESEVAVVIFSATGKLFDYSS 59 689999*******************************************96 PP | |||||||
2 | K-box | 48.7 | 3.2e-17 | 87 | 170 | 15 | 98 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++++ +L ke+e+ r++R+++GedLe+L++ eLq+Leq ++ sl ++ ++K+e ++++i l +k el ++nk+Lr++ Pd.00g878390.m01 87 QPENENHIRLSKELEEKSRQLRQMKGEDLEELNFDELQKLEQLVDASLGRVIETKDERIMSEIMALERKRAELVKANKQLRQRQ 170 55677888999*****9****************************************************************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MMREKIKIKK IDNLPARQVT FSKRRRGIFK KAAELSVLCE SEVAVVIFSA TGKLFDYSSS 60 SMKDVIERYQ AHINGGEKFD EPSIELQPEN ENHIRLSKEL EEKSRQLRQM KGEDLEELNF 120 DELQKLEQLV DASLGRVIET KDERIMSEIM ALERKRAELV KANKQLRQRQ MLSRGNIGPA 180 LMEPERLNNN IGGGGEEEGM SSESATSTTC NSAPSLSLED DSDDVTLSLK LGLP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 4e-69 | MIKC_MADS family protein |