PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g826970.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

AP2

Protein Properties

Length: 406aa MW: 45801.6 Da PI: 7.181

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g826970.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37	8.4e-12	71	127	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+k + g ++ +e Aa+a++ a++k++g Pd.00g826970.m01 71 SRFRGVSRHRWTGRFEAHLWDkLSWNAtqKKKGKQ-GAYDEEESAARAYDLAALKYWG 127 789****************88889994446666.******************98 PP
2	AP2	52.3	1.4e-16	170	221	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g Pd.00g826970.m01 170 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 221 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MEMIMVKNEE NTRRRRLSTV DREAQESPCV KRRRRDPATV AVSCCDNSQS EQHLPQKPAD 60 QTSATTTKRS SRFRGVSRHR WTGRFEAHLW DKLSWNATQK KKGKQGAYDE EESAARAYDL 120 AALKYWGTST FTNFAISDYE EEIEIMQTVT KEEYLASLRR KSSGFSRGVS KYRGVARHHH 180 NGRWEARIGR VFGNKYLYLG TYSTQEEAAR AYDIAAIEYR GINAVTNFDL SSYIRWLKPR 240 ADYPIATQEP ERVAEPQNIL PFMANSYIPT EEPSFSHTNP FASGYLSSLQ KQKVTRSSVP 300 LNTGSKSSSP TALGLLLQSS IFRELVQKNA NFSEDESADG EETMNQTQVG SDDEFNGIFY 360 DGIGDNPFVC SSNSDGDNSW SSIASTILLD QPSKANASSD SLFFFS

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MEMIMVKNEE NTRRRRLSTV DREAQESPCV KRRRRDPATV AVSCCDNSQS EQHLPQKPAD  60
QTSATTTKRS SRFRGVSRHR WTGRFEAHLW DKLSWNATQK KKGKQGAYDE EESAARAYDL  120
AALKYWGTST FTNFAISDYE EEIEIMQTVT KEEYLASLRR KSSGFSRGVS KYRGVARHHH  180
NGRWEARIGR VFGNKYLYLG TYSTQEEAAR AYDIAAIEYR GINAVTNFDL SSYIRWLKPR  240
ADYPIATQEP ERVAEPQNIL PFMANSYIPT EEPSFSHTNP FASGYLSSLQ KQKVTRSSVP  300
LNTGSKSSSP TALGLLLQSS IFRELVQKNA NFSEDESADG EETMNQTQVG SDDEFNGIFY  360
DGIGDNPFVC SSNSDGDNSW SSIASTILLD QPSKANASSD SLFFFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	13	35	RRRRLSTVDREAQESPCVKRRRR
2	14	36	RRRRLSTVDREAQESPCVKRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	1e-91	AP2 family protein