PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g823770.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

AP2

Protein Properties

Length: 425aa MW: 47833.3 Da PI: 9.2174

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g823770.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.5	6e-12	79	135	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n +r k + g ++ +e Aa+a++ a++k++g Pd.00g823770.m01 79 SRFRGVSRHRWTGRYEAHLWDkGSWNPtQRkKGKQ-GAYDEEESAARAYDLAALKYWG 135 789****************88887786625555.******************98 PP
2	AP2	54.6	2.7e-17	178	229	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++gt eeAa a++ a+ +++g Pd.00g823770.m01 178 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAAHAYDIAAIEYRG 229 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MDHLTSVKSE LSQGRRPLCI IEVDALVNKC VKRRRRDSSA VVAPADCSDQ QQGDQRPQQQ 60 AQQAGQSTVA TTTTVKRSSR FRGVSRHRWT GRYEAHLWDK GSWNPTQRKK GKQGAYDEEE 120 SAARAYDLAA LKYWGTSTFT NFPVPDYENE IEIMNTLSKE EYLASLRRRS SGFSRGVSKY 180 RGVARHHHNG RWEARIGRVF GNKYLYLGTY GTQEEAAHAY DIAAIEYRGI NAVTNFDLST 240 YIRWLRPGAN SLGSQEPKLN TESLPMPASS NSIPSKEGKQ MSMFQPNSFP VDDIDISRNR 300 DNFQRQQKQP MPISPCTKSS SSPTALGLLL QSPIFKELVE KNLNGDNEES EKNDIRNLLP 360 VQTNSDNLKR ILYNGMHNNP FTCPSNTSVL PALESQEESI LPLCNSRGQS IWNGAISVFS 420 SPDFN

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MDHLTSVKSE LSQGRRPLCI IEVDALVNKC VKRRRRDSSA VVAPADCSDQ QQGDQRPQQQ  60
AQQAGQSTVA TTTTVKRSSR FRGVSRHRWT GRYEAHLWDK GSWNPTQRKK GKQGAYDEEE  120
SAARAYDLAA LKYWGTSTFT NFPVPDYENE IEIMNTLSKE EYLASLRRRS SGFSRGVSKY  180
RGVARHHHNG RWEARIGRVF GNKYLYLGTY GTQEEAAHAY DIAAIEYRGI NAVTNFDLST  240
YIRWLRPGAN SLGSQEPKLN TESLPMPASS NSIPSKEGKQ MSMFQPNSFP VDDIDISRNR  300
DNFQRQQKQP MPISPCTKSS SSPTALGLLL QSPIFKELVE KNLNGDNEES EKNDIRNLLP  360
VQTNSDNLKR ILYNGMHNNP FTCPSNTSVL PALESQEESI LPLCNSRGQS IWNGAISVFS  420
SPDFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	113	PTQRKKGKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	6e-74	AP2 family protein