PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g787570.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 307aa MW: 34099.1 Da PI: 6.089

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g787570.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76.5	2.1e-24	86	129	8	51
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr gi+KKAeELSvLC+ evav+ifs tgkl++yss Pd.00g787570.m01 86 ARQVTFSKRRRGIFKKAEELSVLCESEVAVVIFSATGKLFDYSS 129 69****************************************96 PP
2	K-box	51.8	3.5e-18	161	240	19	98
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++ +L ke+e+ r++R++ GedLe+L++ eLq+Leq ++ sl ++ ++K+el++++i l kk el e+n++Lr+++ Pd.00g787570.m01 161 ENHIRLTKELEEKSRQLRQMRGEDLEELNIDELQKLEQLVDASLGRVIETKEELIMSEIMALEKKGAELVEANNQLRQRM 240 34457888888888***************************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence
MPHFLTKSTV EIAFINFKCI CHCRFAQVSS LVFPKDTVRE AAISLSHSLS FSENTRTSDP 60 GTPQKGGMVK AMRKKIKIKK IDYLPARQVT FSKRRRGIFK KAEELSVLCE SEVAVVIFSA 120 TGKLFDYSSS STKDVVERYK AHTNGVEKSD EPSVELQLEI ENHIRLTKEL EEKSRQLRQM 180 RGEDLEELNI DELQKLEQLV DASLGRVIET KEELIMSEIM ALEKKGAELV EANNQLRQRM 240 VMLSRGNIGP ALTEPERLIN NIGGGGEEGM SSESATNATI SSCSSGLSLS LEDDCSDVTL 300 ALKLGLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24540.1	8e-61	MIKC_MADS family protein