PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g667200.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

CO-like

Protein Properties

Length: 424aa MW: 47360.6 Da PI: 5.9635

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g667200.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.5	1.5e-09	16	60	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 +r C+ + +k+++++C ++ +lC+ C ++ H+ H++v Pd.00g667200.m01 16 ARACDSCIRKRARWYCAADDAFLCQACDSSVHSAnqlarrHERVL 60 578*****************************6578888898875 PP
2	CCT	68	2.4e-23	369	412	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a Pd.00g667200.m01 369 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 412 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MTSNKKVANA VSAKTARACD SCIRKRARWY CAADDAFLCQ ACDSSVHSAN QLARRHERVL 60 LKTASSLKST YKDDQVSVSD NPAAPSWHGG FRRKARTPRQ GKHKSQEGAR NRFPQVPEVG 120 ADDSNSYDEE NEEDQQQLLY RVPVFDPFVA EMCTATTSAN SNEEAVANYE LANTGEVSKV 180 SSSSPNYNHN GHDGFLLPSD MDLAEFAADV DSLLGRGLED DECFGMEGLG LMDSKENESN 240 CETPEIDMMR EPFVLNFEDY DDSPHLCGEQ DDKLGVGMMD TTYSGDHQQH EEVHAGASKS 300 GKKKEIFLRL DYEAVITAWD GSPWTSGGRP DFNSECLPDC MGVCGTELHF PYGDLNVLGV 360 HQAMADRGRE ARVSRYREKR RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK RASFAGSAFP 420 VLTK

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MTSNKKVANA VSAKTARACD SCIRKRARWY CAADDAFLCQ ACDSSVHSAN QLARRHERVL  60
LKTASSLKST YKDDQVSVSD NPAAPSWHGG FRRKARTPRQ GKHKSQEGAR NRFPQVPEVG  120
ADDSNSYDEE NEEDQQQLLY RVPVFDPFVA EMCTATTSAN SNEEAVANYE LANTGEVSKV  180
SSSSPNYNHN GHDGFLLPSD MDLAEFAADV DSLLGRGLED DECFGMEGLG LMDSKENESN  240
CETPEIDMMR EPFVLNFEDY DDSPHLCGEQ DDKLGVGMMD TTYSGDHQQH EEVHAGASKS  300
GKKKEIFLRL DYEAVITAWD GSPWTSGGRP DFNSECLPDC MGVCGTELHF PYGDLNVLGV  360
HQAMADRGRE ARVSRYREKR RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK RASFAGSAFP  420
VLTK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	380	396	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	2e-85	CO-like family protein