PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g617940.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 1088aa MW: 121206 Da PI: 4.7419

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g617940.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.7	6.3e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien++nrqvt+skRrngi+KKA+EL vLCda+v++i++s+tgk++ey+s Pd.00g617940.m02 9 KLIENHTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMLSNTGKMHEYIS 59 569**********************************************86 PP
2	K-box	77.2	4.2e-26	71	164	1	94
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 yq++ g++l++++++ ++ l kLk+ +++L+re+R++lG dL+ L++ +L++Le+++ +sl+ iR++K+++l++q+e+ +kk k+l+e+ + Pd.00g617940.m02 71 YQHTLGVDLWSSHYQAMKDTLWKLKEINNKLRREIRQRLGHDLNGLTYDQLHSLEDKMASSLEAIRERKYHVLKTQMETYKKKVKNLEERRGN 163 67888999********************************************************************************98866 PP K-box 94 L 94 + Pd.00g617940.m02 164 M 164 5 PP

Sequence ? help Back to Top
Protein Sequence Length: 1088 aa Download sequence
MGRGKIEIKL IENHTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMLSN TGKMHEYISP 60 TTTTKRMYDD YQHTLGVDLW SSHYQAMKDT LWKLKEINNK LRREIRQRLG HDLNGLTYDQ 120 LHSLEDKMAS SLEAIRERKY HVLKTQMETY KKKVKNLEER RGNMLHSYEV ASEDPQYGYV 180 DNEGDYESAV ALANGAFGTF RSPELGRLSD SVSATFSPPL SEINSSRGLK IHGDLSNFEN 240 EELRIQFQVQ FSKRYQRDQS HMEAAASAPP WIPEDDLRLK KAMEAGASLE ALAKGAVRFS 300 RKFSVQELRE RWSSLLYDAD ISAEASSRML EVEGCNSSAA FKSSRVGSSR DSKRKGESIR 360 KHYYAMQKRL RTSNSVDPNS YHKKNFDPNF LFAPHLENGE ALEENFGVGD HNQPLFMDCN 420 DNESNAADAF RAGECVSIGN HGVEGVVREA CPNGFVKQVS LLPNGLGEDT FFHDPACEDL 480 PTQGDDLINF ANALDVEDIG PSHASTDEPL WKTIEDVPAP EMPIDVSLGV NGEDAEKTLV 540 VPDDTDGENI GSSQYEVVHS EAMLNDREVC DELNRSVTIS GGDYADIYLT NEDELTFMDV 600 NGKESMDKSS YESLKPIPLS SPKDVHEYVA PDPCQPQKLV SDSFQDVSHN VHTAKMPDSC 660 QPQNLISETC QDVSHNVHAA EMDVATKPSH SQHDEQRDIS SAEANNPSST SVPNPLTPEL 720 REKEMICTLN TEDPEIPCND DIFPPTGTVH AVVQPTLKEA SGLASSTGKR KCDQQTITLM 780 KEEDPAQPFK VPRMVGHDTI TENSPNHALF SFGIKAAYGD SNGLASVSKH DKNVLADPSQ 840 CRSAHQPPKS ITNRVLKEEG IVAPSTVAEL APVITEPGST KMTFLEPEPN PSALDCEESE 900 EESDDDVDDD DADVPYFSDI EQMILEMDLC PDDQDSYFSK IASAYQDEDS KRHIMRLEQC 960 ARSSMQRDLA SKGALAVLYG RHVKEYIKKT EVILGRATED NEVDIDLGKE GLHNKISRRQ 1020 AVIKMEGDGS FSLKNLGKGS IFLNGKEVTV GQLVSLSSSN LIEIREMAFV FEINHKYAKF 1080 EWSPGRGP

Sequence ? help Back to Top

Protein Sequence Length: 1088 aa Download sequence

MGRGKIEIKL IENHTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMLSN TGKMHEYISP  60
TTTTKRMYDD YQHTLGVDLW SSHYQAMKDT LWKLKEINNK LRREIRQRLG HDLNGLTYDQ  120
LHSLEDKMAS SLEAIRERKY HVLKTQMETY KKKVKNLEER RGNMLHSYEV ASEDPQYGYV  180
DNEGDYESAV ALANGAFGTF RSPELGRLSD SVSATFSPPL SEINSSRGLK IHGDLSNFEN  240
EELRIQFQVQ FSKRYQRDQS HMEAAASAPP WIPEDDLRLK KAMEAGASLE ALAKGAVRFS  300
RKFSVQELRE RWSSLLYDAD ISAEASSRML EVEGCNSSAA FKSSRVGSSR DSKRKGESIR  360
KHYYAMQKRL RTSNSVDPNS YHKKNFDPNF LFAPHLENGE ALEENFGVGD HNQPLFMDCN  420
DNESNAADAF RAGECVSIGN HGVEGVVREA CPNGFVKQVS LLPNGLGEDT FFHDPACEDL  480
PTQGDDLINF ANALDVEDIG PSHASTDEPL WKTIEDVPAP EMPIDVSLGV NGEDAEKTLV  540
VPDDTDGENI GSSQYEVVHS EAMLNDREVC DELNRSVTIS GGDYADIYLT NEDELTFMDV  600
NGKESMDKSS YESLKPIPLS SPKDVHEYVA PDPCQPQKLV SDSFQDVSHN VHTAKMPDSC  660
QPQNLISETC QDVSHNVHAA EMDVATKPSH SQHDEQRDIS SAEANNPSST SVPNPLTPEL  720
REKEMICTLN TEDPEIPCND DIFPPTGTVH AVVQPTLKEA SGLASSTGKR KCDQQTITLM  780
KEEDPAQPFK VPRMVGHDTI TENSPNHALF SFGIKAAYGD SNGLASVSKH DKNVLADPSQ  840
CRSAHQPPKS ITNRVLKEEG IVAPSTVAEL APVITEPGST KMTFLEPEPN PSALDCEESE  900
EESDDDVDDD DADVPYFSDI EQMILEMDLC PDDQDSYFSK IASAYQDEDS KRHIMRLEQC  960
ARSSMQRDLA SKGALAVLYG RHVKEYIKKT EVILGRATED NEVDIDLGKE GLHNKISRRQ  1020
AVIKMEGDGS FSLKNLGKGS IFLNGKEVTV GQLVSLSSSN LIEIREMAFV FEINHKYAKF  1080
EWSPGRGP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	1e-64	MIKC_MADS family protein