PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g603940.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 772aa MW: 85909.7 Da PI: 8.2286

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g603940.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.2	9.3e-06	567	591	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ ++rt C +G +C+F+H+ Pd.00g603940.m02 567 GEKDCPCYMRTLSCMHGTKCRFNHP 591 7789********************9 PP
2	zf-CCCH	19.9	1.3e-06	699	725	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f+r G Ck+ ++Ck++H++ Pd.00g603940.m02 699 PGQPVCLYFSRAGDCKHKSNCKYHHPK 725 57899********************96 PP
3	zf-CCCH	22.6	1.8e-07	746	770	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C +++++G+C+ G CkF+H+ Pd.00g603940.m02 746 GQKICARYSAYGICNSGLACKFNHP 770 7899********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 772 aa Download sequence
MLTAPIGLPN PDVSPNAELS DLDLAILEEI RKLDALLEKI RKLDPALLDK IRKFDPDVLD 60 ELRKIDPALL DGVRKVHPTL LDELRKVDPA VLQEMQLEPA EWDPAIIGAI RKLYLKLREE 120 DEEVAERSTC SGRQTNDNGG EVMKIGEERS RSQHYPVRPE AGEGKRGRKN RKNRKNNQNY 180 FSSGGQHPNL YASPNPGNDD VLSPNPGKVN TVLQVYPAEL DPAIIDAISK LSLKEKEEGE 240 QEVEVVKKVD DERSRRHHYP VRPPGAGDSS HNIKTGTHQF GSNCKFNRTR RSKNNQVSKE 300 KMKEREGLAE KPGQTECKNY FGSGGQRQNR YAPPNPGNDG VLPPNPGKDD VLPANHGDTD 360 CDLATLREIL RHKTALLGII RKLDAGLFSD IQKIDPAVLR EMQANPAEWD PAIIDPICKL 420 SLEEKDESEE EVEKKVDEER SRRHHYPVRP PGPGDSSHNL KTGTHQFGSN CKFNLTRRSK 480 NNQVSKNKMK EREGLAEKPG KTECKVSKNK MKEREGLAEK PGKTEFKNYF RSGGRESGNA 540 CALNPRRGEA SVAPILENFM GLPIRPGEKD CPCYMRTLSC MHGTKCRFNH PDPTPAGESD 600 PPSGNGNGGP ASLQGASSET AAQWYAPISL NNASLYEPIM IPPSQEFPSQ NTEWNGYQAP 660 ERSMPAPPPS YVMNHSVTET NTYGQYPQQK QVQEFPERPG QPVCLYFSRA GDCKHKSNCK 720 YHHPKNKTAV PPSCALSDKG LPLRPGQKIC ARYSAYGICN SGLACKFNHP SL

Sequence ? help Back to Top

Protein Sequence Length: 772 aa Download sequence

MLTAPIGLPN PDVSPNAELS DLDLAILEEI RKLDALLEKI RKLDPALLDK IRKFDPDVLD  60
ELRKIDPALL DGVRKVHPTL LDELRKVDPA VLQEMQLEPA EWDPAIIGAI RKLYLKLREE  120
DEEVAERSTC SGRQTNDNGG EVMKIGEERS RSQHYPVRPE AGEGKRGRKN RKNRKNNQNY  180
FSSGGQHPNL YASPNPGNDD VLSPNPGKVN TVLQVYPAEL DPAIIDAISK LSLKEKEEGE  240
QEVEVVKKVD DERSRRHHYP VRPPGAGDSS HNIKTGTHQF GSNCKFNRTR RSKNNQVSKE  300
KMKEREGLAE KPGQTECKNY FGSGGQRQNR YAPPNPGNDG VLPPNPGKDD VLPANHGDTD  360
CDLATLREIL RHKTALLGII RKLDAGLFSD IQKIDPAVLR EMQANPAEWD PAIIDPICKL  420
SLEEKDESEE EVEKKVDEER SRRHHYPVRP PGPGDSSHNL KTGTHQFGSN CKFNLTRRSK  480
NNQVSKNKMK EREGLAEKPG KTECKVSKNK MKEREGLAEK PGKTEFKNYF RSGGRESGNA  540
CALNPRRGEA SVAPILENFM GLPIRPGEKD CPCYMRTLSC MHGTKCRFNH PDPTPAGESD  600
PPSGNGNGGP ASLQGASSET AAQWYAPISL NNASLYEPIM IPPSQEFPSQ NTEWNGYQAP  660
ERSMPAPPPS YVMNHSVTET NTYGQYPQQK QVQEFPERPG QPVCLYFSRA GDCKHKSNCK  720
YHHPKNKTAV PPSCALSDKG LPLRPGQKIC ARYSAYGICN SGLACKFNHP SL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	174	RKNRKNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	9e-79	C3H family protein