PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g603940.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 794aa MW: 88383.6 Da PI: 8.3514

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g603940.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.1	9.6e-06	589	613	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ ++rt C +G +C+F+H+ Pd.00g603940.m01 589 GEKDCPCYMRTLSCMHGTKCRFNHP 613 7789********************9 PP
2	zf-CCCH	19.8	1.4e-06	721	747	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f+r G Ck+ ++Ck++H++ Pd.00g603940.m01 721 PGQPVCLYFSRAGDCKHKSNCKYHHPK 747 57899********************96 PP
3	zf-CCCH	22.6	1.8e-07	768	792	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C +++++G+C+ G CkF+H+ Pd.00g603940.m01 768 GQKICARYSAYGICNSGLACKFNHP 792 7899********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 794 aa Download sequence
MLTAPIGLPN PDVSPNAELS DLDLAILEEI RKLDALLEKI RKLDPALLDK IRKFDPDVLD 60 ELRKIDPALL DGVRKVHPTL LDELRKVDPA VLQEMQLEPA EWDPAIIGAI RKLYLKLREE 120 DEEVAERSTC SGRQTNDNGG EVMKIGEERS RSQHYPVRPE AGEGKRGRKN RKNRKNNQNY 180 FSSGGQHPNL YASPNPGNDD VLSPNPGKVN TVLQVYPAEL DPAIIDAISK LSLKEKEEGE 240 QEVEVVKKVD DERSRRHHYP VRPPGAGDSS HNIKTGTHQF GSNCKFNRTR RSKNNQVSKE 300 KMKEREGLAE KPGQTECKNY FGSGGQRQNR YAPPNPGNDG VLPPNPGKDD VLPANHGDTD 360 CDLATLREIL RHKTALLGII RKLDAGLFSD IQKIDPAVLR EMQANPAEWD PAIIDPICKL 420 SLEEKDESEE EVEKKVDEER SRRHHYPVRP PGPGDSSHNL KTGTHQFGSN CKFNLTRRSK 480 NNQVSKNKMK EREGLAEKPG KTECKVSKDK MKEREGLAEK PGKTECKVSK NKMKEREGLA 540 EKPGKTEFKN YFRSGGRESG NACALNPRRG EASVAPILEN FMGLPIRPGE KDCPCYMRTL 600 SCMHGTKCRF NHPDPTPAGE SDPPSGNGNG GPASLQGASS ETAAQWYAPI SLNNASLYEP 660 IMIPPSQEFP SQNTEWNGYQ APERSMPAPP PSYVMNHSVT ETNTYGQYPQ QKQVQEFPER 720 PGQPVCLYFS RAGDCKHKSN CKYHHPKNKT AVPPSCALSD KGLPLRPGQK ICARYSAYGI 780 CNSGLACKFN HPSL

Sequence ? help Back to Top

Protein Sequence Length: 794 aa Download sequence

MLTAPIGLPN PDVSPNAELS DLDLAILEEI RKLDALLEKI RKLDPALLDK IRKFDPDVLD  60
ELRKIDPALL DGVRKVHPTL LDELRKVDPA VLQEMQLEPA EWDPAIIGAI RKLYLKLREE  120
DEEVAERSTC SGRQTNDNGG EVMKIGEERS RSQHYPVRPE AGEGKRGRKN RKNRKNNQNY  180
FSSGGQHPNL YASPNPGNDD VLSPNPGKVN TVLQVYPAEL DPAIIDAISK LSLKEKEEGE  240
QEVEVVKKVD DERSRRHHYP VRPPGAGDSS HNIKTGTHQF GSNCKFNRTR RSKNNQVSKE  300
KMKEREGLAE KPGQTECKNY FGSGGQRQNR YAPPNPGNDG VLPPNPGKDD VLPANHGDTD  360
CDLATLREIL RHKTALLGII RKLDAGLFSD IQKIDPAVLR EMQANPAEWD PAIIDPICKL  420
SLEEKDESEE EVEKKVDEER SRRHHYPVRP PGPGDSSHNL KTGTHQFGSN CKFNLTRRSK  480
NNQVSKNKMK EREGLAEKPG KTECKVSKDK MKEREGLAEK PGKTECKVSK NKMKEREGLA  540
EKPGKTEFKN YFRSGGRESG NACALNPRRG EASVAPILEN FMGLPIRPGE KDCPCYMRTL  600
SCMHGTKCRF NHPDPTPAGE SDPPSGNGNG GPASLQGASS ETAAQWYAPI SLNNASLYEP  660
IMIPPSQEFP SQNTEWNGYQ APERSMPAPP PSYVMNHSVT ETNTYGQYPQ QKQVQEFPER  720
PGQPVCLYFS RAGDCKHKSN CKYHHPKNKT AVPPSCALSD KGLPLRPGQK ICARYSAYGI  780
CNSGLACKFN HPSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	174	RKNRKNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	3e-75	C3H family protein