PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g521340.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 923aa    MW: 101119 Da    PI: 5.1967
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g521340.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.47.8e-25149250199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae+        ++++ s++l+++d++ +sW++++iyr++++r++lt+GW+ Fv a++L++gD+v+F   ++
  Pd.00g521340.m01 149 FCKTLTASDTSTHGGFSVPRRAAEKLfppldfTMQPP-SQELVVRDLHDNSWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFI--RD 238
                       99*********************999*****955554.459************************************************..45 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       ++ +l+++v+r+
  Pd.00g521340.m01 239 EKSQLMIGVRRA 250
                       77778****997 PP
2Auxin_resp113.61.9e-37275358183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+++s+F+++YnPra++seFv++++ ++ka++ +++svGmRf m+fete+s +rr++Gt+v++sdldp+rWp+SkWr+L+
  Pd.00g521340.m01 275 AAHAAANRSPFTIFYNPRACPSEFVIPLATYQKAIYgTQLSVGMRFGMMFETEESGKRRYMGTIVSTSDLDPLRWPGSKWRNLQ 358
                       79**********************************9*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 923 aa     Download sequence    
MIMGSVEEKI KAGGLLSGAQ SSILDEMKLL KELQDHSGSR KAINSELWHA CAGPLVCLPQ  60
VGSLSYYFPQ GHSEQVAVST KRTATSQIPN YPNLPSQLLC QVQNVTLHAD KETDEIYAQM  120
SLKPVNSEKD VFPVPDFGLK PSKHPSEFFC KTLTASDTST HGGFSVPRRA AEKLFPPLDF  180
TMQPPSQELV VRDLHDNSWT FRHIYRGQPK RHLLTTGWSL FVGAKRLRAG DSVLFIRDEK  240
SQLMIGVRRA NRQQTTLPSS VLSADSMHIG VLAAAAHAAA NRSPFTIFYN PRACPSEFVI  300
PLATYQKAIY GTQLSVGMRF GMMFETEESG KRRYMGTIVS TSDLDPLRWP GSKWRNLQVE  360
WDEPGCCDKQ NRVSSWEIET PENLFIFPSL TSSLKRPLHS GFLGAETEWG NLIKRPFIRV  420
PEIGNGNSFP YSISNLCSEQ LVNMLLKPQL VNHAGTLAAL QQQSHANGDL IADMKAMQAK  480
LNQKNPGVFS EGKLNNLTKF GSQAPVGNST DKTKLETDFS ADQLSQLNST GLGIEDKLAA  540
AFVSPYNLVN QLTFANQNQS AAQLQTSPRP MQPPLESLLY HSQQTDMPNS DFNSTNGSLP  600
FLDNDECIFY QSCQPFAGTL RSQGPLSVFG LQDSSAVLTE ANNSSLTSIG QEMWDNSLNN  660
CRLLPQVDQL TSSHQGPGSL NCISNSSSLR DLSDESNNQS GIYGCPNVDV GSGVSTVIDP  720
SVSSTILDEF STLKNADFHN PSDCLLGNLS SSQDLQSQIT SASLGDSQAF SRQDLADNSG  780
GTSSSNIDLD ESSLLQNNSS WHQVVPPVRT YTKVQKTGSV GRSIDVTSFK NYEELCLAIE  840
CMFGLEGLLN DPRGSGWKLV YVDYENDVLL VGDDPWEEFV GCVRCIRILS PTEVQQMSEE  900
GMKLLNSAAM QGINGTMSEG GRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein