PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g477690.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

AP2

Protein Properties

Length: 405aa MW: 45812.6 Da PI: 8.0537

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g477690.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37	8.3e-12	70	126	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+k + g ++ +e Aa+a++ a++k++g Pd.00g477690.m01 70 SRFRGVSRHRWTGRFEAHLWDkLSWNAtqKKKGKQ-GAYDEEESAARAYDLAALKYWG 126 789****************88889994446666.******************98 PP
2	AP2	52.3	1.4e-16	169	220	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g Pd.00g477690.m01 169 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 220 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MEMIMVKNEE NTRRRRLSTV DREAQESRCV KRKRRDPATV AVSCDNSQSE QHLPQKPADQ 60 TSATTTKRSS RFRGVSRHRW TGRFEAHLWD KLSWNATQKK KGKQGAYDEE ESAARAYDLA 120 ALKYWGTSTF TNFAISDYEE EIEIMQTVTK EEYLASLRRK SSGFSRGVSK YRGVARHHHN 180 GRWEARIGRV FGNKYLYLGT YSTQEEAARA YDIAAIEYRG INAVTNFDLS SYIRWLKPRA 240 DYPIATQEPE RVAEPQNILP FMANSYIPTE EPSFSHTIPF ASGYLSSLQK QKVTRSSVPL 300 NTGSKSSSPT ALGLLLQSSI FRELVQKNAN FSEDESTDGE ETKNQTQVGS DDEFNGIFYD 360 GIGDNPFVCS SNSDGDNSWS SIASTILLNQ PSKENASSDS LFFFS

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MEMIMVKNEE NTRRRRLSTV DREAQESRCV KRKRRDPATV AVSCDNSQSE QHLPQKPADQ  60
TSATTTKRSS RFRGVSRHRW TGRFEAHLWD KLSWNATQKK KGKQGAYDEE ESAARAYDLA  120
ALKYWGTSTF TNFAISDYEE EIEIMQTVTK EEYLASLRRK SSGFSRGVSK YRGVARHHHN  180
GRWEARIGRV FGNKYLYLGT YSTQEEAARA YDIAAIEYRG INAVTNFDLS SYIRWLKPRA  240
DYPIATQEPE RVAEPQNILP FMANSYIPTE EPSFSHTIPF ASGYLSSLQK QKVTRSSVPL  300
NTGSKSSSPT ALGLLLQSSI FRELVQKNAN FSEDESTDGE ETKNQTQVGS DDEFNGIFYD  360
GIGDNPFVCS SNSDGDNSWS SIASTILLNQ PSKENASSDS LFFFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	13	35	RRRRLSTVDREAQESRCVKRKRR
2	14	36	RRRRLSTVDREAQESRCVKRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	1e-91	AP2 family protein