PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g469110.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 208aa MW: 23959.3 Da PI: 9.7095 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.3 | 1.1e-29 | 3 | 52 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRr g+lKKA+ELSvLCdaeva+iifs++gklye++s Pd.00g469110.m01 3 RIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPRGKLYEFAS 52 8***********************************************86 PP | |||||||
2 | K-box | 83.4 | 4.9e-28 | 70 | 165 | 4 | 97 |
K-box 4 ssgks..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 +++++ +++++++l+qe++ + k+ie L+ ++R+llGe+L+s++++eLq++eqqLe+s++++R++K ++++eqie+l++k k+l en++L Pd.00g469110.m01 70 HTNNKpvSTDQNMQHLKQESSSMMKQIELLEVSKRKLLGEGLGSCTIEELQEIEQQLERSVSNVRARKAQVFKEQIEQLKEKGKALAAENERL 162 4555567899*********************************************************************************** PP K-box 95 rkk 97 +k Pd.00g469110.m01 163 IEK 165 988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence |
MRRIENATSR QVTFSKRRSG LLKKAFELSV LCDAEVALII FSPRGKLYEF ASSSMQTTIE 60 RYQKHAKDNH TNNKPVSTDQ NMQHLKQESS SMMKQIELLE VSKRKLLGEG LGSCTIEELQ 120 EIEQQLERSV SNVRARKAQV FKEQIEQLKE KGKALAAENE RLIEKCGRIQ PRQASNEQRE 180 NLAYIESSQS SDVETELFIG LPERRMKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 4e-82 | MIKC_MADS family protein |