PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g421350.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

AP2

Protein Properties

Length: 634aa MW: 70237.1 Da PI: 6.8514

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g421350.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51	3.6e-16	301	360	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g Pd.00g421350.m01 301 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 360 78*****************988886678446***********************98 PP
2	AP2	41.4	3.6e-13	405	455	3	55
AP2 3 ykGV.rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV +++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Pd.00g421350.m01 405 YRGVtSRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 455 9**99******988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence
MIELPCHKRN LPTISDQNRE EEQKSSNLEK SSSSSVAAIA SSVPTSFFHS PPHFNYGIYY 60 GVEGDTSAGL YSPLSMMPLK SDGSLCIMEA LNRSQQPQGI VTTTTTSTPK LEDFFGGATM 120 GTHYENNDRE AMALSLDSMH QEQSVHQVQV QAQQQQYSYY SGLRGHEMML EEGHKETHLA 180 ADNYNLQQPR MGPDQSISEM KCWISRNYAA NHAMEHNMIG CMGDNGAESG SIGAMPYGDL 240 QSLSLSMSPG SQSSCVTGSQ QISPTLADSV TMDTKKRGPE KVDQKQIVHR KSLDTFGQRT 300 SQYRGVTRHR WTGRYEAHLW DNSCKKEGQS RKGRQVYLGG YDMEEKAARA YDLAALKYWG 360 PSTHINFPLE NYQKELEDMK NMTRQEYVAH LRRKSSGFSR GASMYRGVTS RHHQHGRWQA 420 RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDITRYDVD RIMASNTLLA 480 GELAKRNKET VPVNEAATNQ NHVAQTSNGE AIVSLKNINE GEDWKMALYQ SSQQLDQKQP 540 STEPHNAIQA EGEDSGKMGA AHVSNASSLV TSLSSSREGS PDKSCLPSFF GMPPAASKFF 600 TSSSDTVSSW IPTVQSRPGL TMPHMPIFAA WTDA

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence

MIELPCHKRN LPTISDQNRE EEQKSSNLEK SSSSSVAAIA SSVPTSFFHS PPHFNYGIYY  60
GVEGDTSAGL YSPLSMMPLK SDGSLCIMEA LNRSQQPQGI VTTTTTSTPK LEDFFGGATM  120
GTHYENNDRE AMALSLDSMH QEQSVHQVQV QAQQQQYSYY SGLRGHEMML EEGHKETHLA  180
ADNYNLQQPR MGPDQSISEM KCWISRNYAA NHAMEHNMIG CMGDNGAESG SIGAMPYGDL  240
QSLSLSMSPG SQSSCVTGSQ QISPTLADSV TMDTKKRGPE KVDQKQIVHR KSLDTFGQRT  300
SQYRGVTRHR WTGRYEAHLW DNSCKKEGQS RKGRQVYLGG YDMEEKAARA YDLAALKYWG  360
PSTHINFPLE NYQKELEDMK NMTRQEYVAH LRRKSSGFSR GASMYRGVTS RHHQHGRWQA  420
RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDITRYDVD RIMASNTLLA  480
GELAKRNKET VPVNEAATNQ NHVAQTSNGE AIVSLKNINE GEDWKMALYQ SSQQLDQKQP  540
STEPHNAIQA EGEDSGKMGA AHVSNASSLV TSLSSSREGS PDKSCLPSFF GMPPAASKFF  600
TSSSDTVSSW IPTVQSRPGL TMPHMPIFAA WTDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-153	AP2 family protein