PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g417470.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 518aa MW: 57360.7 Da PI: 4.6761

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g417470.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.9	5.3e-11	303	326	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+++++tGtCk+ ++CkF+H++ Pd.00g417470.m01 303 PDCSYYLKTGTCKFRSNCKFNHPR 326 78********************96 PP
2	zf-CCCH	30.5	6.3e-10	372	397	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++r+ C yG +C+F+H+ Pd.00g417470.m01 372 PGERDCPYYMRNLSCGYGLSCRFNHP 397 5789*********************9 PP
3	zf-CCCH	25.3	2.7e-08	445	471	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f+ tG Ck+ ++Ck++H++ Pd.00g417470.m01 445 PGQPVCIYFSTTGDCKFKSNCKYHHPK 471 5789*********************96 PP
4	zf-CCCH	22.4	2.2e-07	492	516	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C ++ +G+C+ G+ CkF H+ Pd.00g417470.m01 492 GQNICTQYSTYGICNSGPACKFDHP 516 6789********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence
MFPAAAVALR LLLPVSVSLY VLYKYWRSGR QTESWVPTNS GDNGVVRPKS SKNDVVPSDG 60 DLAFVEEILK NDHVFLNKIR TLDPAVLDEL LKIDPVALDA LLRIDPAVLR DSAELDPAII 120 DAICELSEKE EGDEEADWSC SRPVTESSLV IGVPTNSGNN DVAPSNSGNN DVVPPNSGNN 180 DVVPCPELSD RDLAILEEIL KDDPVLLDEI RTHDPAVINE LRKFDPAVLR EMVLDSAEVD 240 PTIIDAIRKL CLKRKEEDEQ EAKGSCSGRE TESENENGNE TRSQERDEET SRSRDYPLRP 300 EAPDCSYYLK TGTCKFRSNC KFNHPRTTTK NNQDYFWSGG RKDGRDGSFN HRSREPFAAP 360 FVENFMGLPI RPGERDCPYY MRNLSCGYGL SCRFNHPDPT PAGESDPPSG YGNGGPASSS 420 QGIPSRNTEH NGYQQQQVEE LPQRPGQPVC IYFSTTGDCK FKSNCKYHHP KNQTAVSPSC 480 ALNDKGLPLR PGQNICTQYS TYGICNSGPA CKFDHPSL

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence

MFPAAAVALR LLLPVSVSLY VLYKYWRSGR QTESWVPTNS GDNGVVRPKS SKNDVVPSDG  60
DLAFVEEILK NDHVFLNKIR TLDPAVLDEL LKIDPVALDA LLRIDPAVLR DSAELDPAII  120
DAICELSEKE EGDEEADWSC SRPVTESSLV IGVPTNSGNN DVAPSNSGNN DVVPPNSGNN  180
DVVPCPELSD RDLAILEEIL KDDPVLLDEI RTHDPAVINE LRKFDPAVLR EMVLDSAEVD  240
PTIIDAIRKL CLKRKEEDEQ EAKGSCSGRE TESENENGNE TRSQERDEET SRSRDYPLRP  300
EAPDCSYYLK TGTCKFRSNC KFNHPRTTTK NNQDYFWSGG RKDGRDGSFN HRSREPFAAP  360
FVENFMGLPI RPGERDCPYY MRNLSCGYGL SCRFNHPDPT PAGESDPPSG YGNGGPASSS  420
QGIPSRNTEH NGYQQQQVEE LPQRPGQPVC IYFSTTGDCK FKSNCKYHHP KNQTAVSPSC  480
ALNDKGLPLR PGQNICTQYS TYGICNSGPA CKFDHPSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	4e-70	C3H family protein