PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g382070.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

CO-like

Protein Properties

Length: 382aa MW: 41572.8 Da PI: 6.308

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g382070.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25	3.8e-08	18	58	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ +++ + lfC+ ++ +lC +C +++H H+ Pd.00g382070.m01 18 KPCDSCKNSAAALFCRVDSAFLCLTCDTKIHAAnklatrHE 58 57****99*******************6566776676 PP
2	zf-B_box	27.3	7.4e-09	60	105	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H+ H++vp+ Pd.00g382070.m01 60 VWMCEVCEQAPASVTCKADAAALCVTCDADIHSAnplarrHDRVPV 105 689*****************************66899999999986 PP
3	CCT	69	1.2e-23	310	353	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkF+K+irY+sRKa+Ae+RpR+KGrF+k++ Pd.00g382070.m01 310 REARVLRYREKRKNRKFQKTIRYASRKAYAETRPRIKGRFAKRT 353 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MVIQAGGWRA MAGGLVAKPC DSCKNSAAAL FCRVDSAFLC LTCDTKIHAA NKLATRHERV 60 WMCEVCEQAP ASVTCKADAA ALCVTCDADI HSANPLARRH DRVPVEPFFD SAESIIVKSA 120 AASSVDSLNF LLPNGAVPSH PKDDENDAAS TWLIPNLNFN SKLQMDIAPD IIKSSELFLP 180 EMDSLLEFDY PNPIHHDISG SGTDSVVPVQ PDPLPPPSLN INRVSAEQNC FDLDFCRSKL 240 SSSFSYPTQS LSQSVSSSSM EVGVVPDGNS MSDISYPFGR NASHTVSDPS AQVSATTANQ 300 VATQLSGLDR EARVLRYREK RKNRKFQKTI RYASRKAYAE TRPRIKGRFA KRTETEIEAV 360 DNIYGSAQGA FIPETYGVVP TF

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MVIQAGGWRA MAGGLVAKPC DSCKNSAAAL FCRVDSAFLC LTCDTKIHAA NKLATRHERV  60
WMCEVCEQAP ASVTCKADAA ALCVTCDADI HSANPLARRH DRVPVEPFFD SAESIIVKSA  120
AASSVDSLNF LLPNGAVPSH PKDDENDAAS TWLIPNLNFN SKLQMDIAPD IIKSSELFLP  180
EMDSLLEFDY PNPIHHDISG SGTDSVVPVQ PDPLPPPSLN INRVSAEQNC FDLDFCRSKL  240
SSSFSYPTQS LSQSVSSSSM EVGVVPDGNS MSDISYPFGR NASHTVSDPS AQVSATTANQ  300
VATQLSGLDR EARVLRYREK RKNRKFQKTI RYASRKAYAE TRPRIKGRFA KRTETEIEAV  360
DNIYGSAQGA FIPETYGVVP TF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	1e-104	CO-like family protein