PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g376330.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 165aa MW: 18815.7 Da PI: 9.505 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.9 | 9.8e-22 | 10 | 57 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ie +s r+vtfskRr g++KKA+EL+++C++eva+iifs gk + + Pd.00g376330.m01 10 LIETESARHVTFSKRRSGLFKKASELCTMCAVEVAIIIFSIGGKAFSF 57 5999************************************99987665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence |
MGRKKTQMEL IETESARHVT FSKRRSGLFK KASELCTMCA VEVAIIIFSI GGKAFSFGHP 60 NVHSVFNRLR FSENPDASTS SNEAAGQDPI LHDLNKTHSD LIENVGLVKQ IGKKMRRAIM 120 EKPKPDWFYA PRESLSMEVL YEMKEALEYV QENVRRDKER LLAQA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-32 | M-type_MADS family protein |