PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1289250.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 524aa MW: 58226.1 Da PI: 4.9274

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1289250.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	75.4	4.4e-24	303	346	8	51
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr gi+KKAeELSvLC+ evav+ifs tgkl++yss Pd.00g1289250.m02 303 ARQVTFSKRRRGIFKKAEELSVLCESEVAVVIFSATGKLFDYSS 346 69****************************************96 PP
2	K-box	45.9	2.5e-16	26	108	15	97
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + ++++ +L ke+e+ r++R+++GedLe+L++ eLq+Leq ++ sl ++ ++K+e ++++i l +k el ++nk+Lr++ Pd.00g1289250.m02 26 QPENENHIRLSKELEEKSRQLRQMKGEDLEELNFDELQKLEQLVDASLGRVIETKDERIMSEIMALERKRAELVKANKQLRQR 108 5567788899999999*************************************************************97 PP
3	K-box	50.5	8.7e-18	378	457	19	98
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++ +L ke+e+ r++R++ GedLe+L++ eLq+Leq ++ sl ++ ++K+el++++i l kk el e+n++Lr+++ Pd.00g1289250.m02 378 ENHIRLTKELEEKSRQLRQMRGEDLEELNIDELQKLEQLVDASLGRVIETKEELIMSEIMALEKKGAELVEANNQLRQRM 457 34457888888888***************************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence
MKDVIERYQA HINGGEKFDE PSIELQPENE NHIRLSKELE EKSRQLRQMK GEDLEELNFD 60 ELQKLEQLVD ASLGRVIETK DERIMSEIMA LERKRAELVK ANKQLRQRQM LSRGNIGPAL 120 MEPERLNNNI GGGGEEEGMS SESATSTTCN SAPSLSLEDD SDDVTLSLKL GNFQLQDLNT 180 KGAIENIQGG NASIISLIKK WRVVNVCKIN KENRELCINA ACFGDSCGLC ICLGYQCRPT 240 LLKDSKFSQK TPQPAGEAAI SLSHSLSFSE NTRTSDPGTP QKGGMVKTMR KKIKIKKIDY 300 LPARQVTFSK RRRGIFKKAE ELSVLCESEV AVVIFSATGK LFDYSSSSTK DVVERYKAHT 360 NGVEKSDEPS VELQLEIENH IRLTKELEEK SRQLRQMRGE DLEELNIDEL QKLEQLVDAS 420 LGRVIETKEE LIMSEIMALE KKGAELVEAN NQLRQRMVML SRGNIGPALT EPERLINNIG 480 GGGEEGMSSE SATNATISSC SSGLSLSLED DCSDVTLALK LGLP

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence

MKDVIERYQA HINGGEKFDE PSIELQPENE NHIRLSKELE EKSRQLRQMK GEDLEELNFD  60
ELQKLEQLVD ASLGRVIETK DERIMSEIMA LERKRAELVK ANKQLRQRQM LSRGNIGPAL  120
MEPERLNNNI GGGGEEEGMS SESATSTTCN SAPSLSLEDD SDDVTLSLKL GNFQLQDLNT  180
KGAIENIQGG NASIISLIKK WRVVNVCKIN KENRELCINA ACFGDSCGLC ICLGYQCRPT  240
LLKDSKFSQK TPQPAGEAAI SLSHSLSFSE NTRTSDPGTP QKGGMVKTMR KKIKIKKIDY  300
LPARQVTFSK RRRGIFKKAE ELSVLCESEV AVVIFSATGK LFDYSSSSTK DVVERYKAHT  360
NGVEKSDEPS VELQLEIENH IRLTKELEEK SRQLRQMRGE DLEELNIDEL QKLEQLVDAS  420
LGRVIETKEE LIMSEIMALE KKGAELVEAN NQLRQRMVML SRGNIGPALT EPERLINNIG  480
GGGEEGMSSE SATNATISSC SSGLSLSLED DCSDVTLALK LGLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24540.1	9e-58	MIKC_MADS family protein