PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1186330.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 297aa    MW: 33240.6 Da    PI: 10.1034
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1186330.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.53.7e-21221041099
                        HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         + s+rl++p kf+++++   + + +  l  +sg +W+v+l  + + ++ ++++GW++Fvk+++L+ gDf+vFk+dg+s+f  +v+++++
  Pd.00g1186330.m01  22 DF-SQRLRIPPKFVKNFNVR-PLH-KCALSGPSGIRWTVEL--EERENGLFFQDGWQGFVKDHHLENGDFLVFKYDGESKF--KVTIYDR 104
                        44.457********666544.454.899*************..**********************************9999..8988886 PP
2B338.61.9e-121992821398
                        TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        ++ +++pk+ a + g+ ++  k ++++d++grsW vkl++  + +s+r+ +++G  + ++an++  gD+ +F++++ s +   +++fr
  Pd.00g1186330.m01 199 RCGVSIPKEVAVTEGLLSK--KSMMIQDPTGRSWPVKLRVrgKLSSCRVDMSTGLLDCCNANQIIPGDTAIFEFVKPSLA--QIHIFR 282
                        6889*******99988854..569**************9966667778*************************9875544..666665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MARKLVKPSL NKQSFFKILL GDFSQRLRIP PKFVKNFNVR PLHKCALSGP SGIRWTVELE  60
ERENGLFFQD GWQGFVKDHH LENGDFLVFK YDGESKFKVT IYDRTACEKN VKLAEGSGCP  120
VSLANKKKAQ VKEEIVDCET RNYNKNCQNK AIVSGRRSGN YVIPGRRPAN DHVGATSTEP  180
VLFIPKYSCF IITFTRKLRC GVSIPKEVAV TEGLLSKKSM MIQDPTGRSW PVKLRVRGKL  240
SSCRVDMSTG LLDCCNANQI IPGDTAIFEF VKPSLAQIHI FRVGGNSVVL AAPDVKD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-22B3 family protein