PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1168650.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 168aa    MW: 19132.1 Da    PI: 9.75
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1168650.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.81e-211360249
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        ie +s r+vtfskRr g++KKA+EL+++C++eva+iifs  gk + +
  Pd.00g1168650.m01 13 LIETESARHVTFSKRRSGLFKKASELCTMCAVEVAIIIFSIGGKAFSF 60
                       5999************************************99987665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    
MPNMGRKKTQ MELIETESAR HVTFSKRRSG LFKKASELCT MCAVEVAIII FSIGGKAFSF  60
GHPNVHSVFN RLRFSENPDA STSSNEAAGQ DPILHDLNKT HSDLIENVGL VKKIGKKMRR  120
AIMEKAKPDW FYAPRESLSM EVLYEMKEAL EYVQENVRRD KERLLAQA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-33M-type_MADS family protein