PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1005500.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 278aa    MW: 32050.3 Da    PI: 8.767
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1005500.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.31.1e-293080151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krienk+ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eyss
  Pd.00g1005500.m01 30 KRIENKISRQVTFSKRRAGLLKKAHEISVLCDADVALIVFSTKGKLFEYSS 80
                       79***********************************************96 PP
2K-box94.32e-31991954100
              K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                        ++ +  +e + + ++ e+ kL ++ie Lqr++Rh+ GedL+sLsl+eLq+Le qLe++lk+iR++Kn+l++e+i+el kk+k+lqe+n++L 
  Pd.00g1005500.m01  99 QQLTTDSEPQGSCWSLEYPKLAARIEVLQRKLRHFTGEDLDSLSLRELQNLELQLETALKRIRTRKNQLMHESISELHKKQKALQEQNNSLG 190
                        5556678888899******************************************************************************* PP

              K-box  96 kklee 100
                        kkl+e
  Pd.00g1005500.m01 191 KKLKE 195
                        **986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MRTKLLSHYS CMQKWLSKFN ELDRGKVQLK RIENKISRQV TFSKRRAGLL KKAHEISVLC  60
DADVALIVFS TKGKLFEYSS DSSMESILGR YDQYSHAEQQ LTTDSEPQGS CWSLEYPKLA  120
ARIEVLQRKL RHFTGEDLDS LSLRELQNLE LQLETALKRI RTRKNQLMHE SISELHKKQK  180
ALQEQNNSLG KKLKENENML EVEHDGQVQQ VEQHQSNQAA YNSSTLMLMP PPPPQTSGGI  240
QARGGMEDGD DNDGRTQTRP PTTTNTLMPM WMYRHFNE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-74MIKC_MADS family protein