PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g083420.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 814aa MW: 90525.5 Da PI: 8.031

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g083420.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.1	9.8e-06	609	633	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ ++rt C +G +C+F+H+ Pd.00g083420.m02 609 GEKDCPCYMRTLSCMHGTKCRFNHP 633 7789********************9 PP
2	zf-CCCH	19.8	1.4e-06	741	767	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f+r G Ck+ ++Ck++H++ Pd.00g083420.m02 741 PGQPVCLYFSRAGDCKHKSNCKYHHPK 767 57899********************96 PP
3	zf-CCCH	22.6	1.9e-07	788	812	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C +++++G+C+ G CkF+H+ Pd.00g083420.m02 788 GQKICARYSAYGICNSGLACKFNHP 812 7899********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 814 aa Download sequence
MLTAPIGLPN PDVPPNAELS DLDLAILEEI RKLDALLEKI RKLDPALLDK IRKFDPDVLD 60 ELRKIDPALL DGVRKVHPTL LDELRKVDPA VLQEMQLEPA EWDPAIIGAI RKLYLKLREE 120 DEEVAERSTC SGRQTNDNGG EVMKIGEERS RSQHYPVRPE AGEGKRGRKN RKNRKNRKNN 180 QNYFSSGGQH PNLYASPNPG NDDVLSPNPG KVNTVLQVYP AELDPAIIDA ISKLSLKEKE 240 EGEQEVEVVK KVDDERSRRH HYPVRPPGAG DSSHNIKTGT HQFGSNCKFN RTRRSKNNQV 300 SKEKMKEREG LAEKPGQTEC KNYFGSGGQR QNRYAPPNPG NDGVLPPNPG KDDVLPANHG 360 DTDCDLATLR EILRHKTALL GIIRKLDAGL FSDIQKIDPA VLREMQANPA EWDPAIIDPI 420 CKLSLEEKDE SEEEVEVSCG GPETEIRNEN RYKTQSEERD GGGGENKNEN GGEVQKKVDE 480 ERSRRHHYPV RPPGPGDSSH NLKTGTHQFG SNCKFNLTRR SKNNQVSKNK MKEREGLAEK 540 PGKTECKVSK NKMKEREGLA EKPGKTEFKN YFRSGGRESG NACALNPRRG EASVAPILEN 600 FMGLPIRPGE KDCPCYMRTL SCMHGTKCRF NHPDPTPAGE SDPPSGNGNG GPASLQGASS 660 ETAAQWYAPI SLNNASLYEP IMIPPSQEFP SQNTEWNGYQ APERSMPAPP PSYVMNHSVT 720 ETNTYGQYPQ QKQVQEFPER PGQPVCLYFS RAGDCKHKSN CKYHHPKNKT AVPPSCALSD 780 KGLPLRPGQK ICARYSAYGI CNSGLACKFN HPSL

Sequence ? help Back to Top

Protein Sequence Length: 814 aa Download sequence

MLTAPIGLPN PDVPPNAELS DLDLAILEEI RKLDALLEKI RKLDPALLDK IRKFDPDVLD  60
ELRKIDPALL DGVRKVHPTL LDELRKVDPA VLQEMQLEPA EWDPAIIGAI RKLYLKLREE  120
DEEVAERSTC SGRQTNDNGG EVMKIGEERS RSQHYPVRPE AGEGKRGRKN RKNRKNRKNN  180
QNYFSSGGQH PNLYASPNPG NDDVLSPNPG KVNTVLQVYP AELDPAIIDA ISKLSLKEKE  240
EGEQEVEVVK KVDDERSRRH HYPVRPPGAG DSSHNIKTGT HQFGSNCKFN RTRRSKNNQV  300
SKEKMKEREG LAEKPGQTEC KNYFGSGGQR QNRYAPPNPG NDGVLPPNPG KDDVLPANHG  360
DTDCDLATLR EILRHKTALL GIIRKLDAGL FSDIQKIDPA VLREMQANPA EWDPAIIDPI  420
CKLSLEEKDE SEEEVEVSCG GPETEIRNEN RYKTQSEERD GGGGENKNEN GGEVQKKVDE  480
ERSRRHHYPV RPPGPGDSSH NLKTGTHQFG SNCKFNLTRR SKNNQVSKNK MKEREGLAEK  540
PGKTECKVSK NKMKEREGLA EKPGKTEFKN YFRSGGRESG NACALNPRRG EASVAPILEN  600
FMGLPIRPGE KDCPCYMRTL SCMHGTKCRF NHPDPTPAGE SDPPSGNGNG GPASLQGASS  660
ETAAQWYAPI SLNNASLYEP IMIPPSQEFP SQNTEWNGYQ APERSMPAPP PSYVMNHSVT  720
ETNTYGQYPQ QKQVQEFPER PGQPVCLYFS RAGDCKHKSN CKYHHPKNKT AVPPSCALSD  780
KGLPLRPGQK ICARYSAYGI CNSGLACKFN HPSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	174	RKNRKNR
2	171	177	RKNRKNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	2e-78	C3H family protein