PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0005509.1_g030.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 431aa    MW: 48503.3 Da    PI: 7.2833
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0005509.1_g030.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2232e-07356395137
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfg 37 
                                s+y+GV++++++gr++A+++d  ++  g  rk  ++gk  
  Pav_sc0005509.1_g030.1.mk 356 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQVGKLS 395
                                78*******************7777666555888888765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    
MKSMSNDGSS NNNNNNNNSN NNNNNWLDFS LSPNMKMEAP SEPHHHHHHH QISESSSSSV  60
AAIASSVPTS FFHSPPHFNY GIYYGVEGDT SAGLYSPLSM MPLKSDGSLC IMEALNRSQQ  120
PQGMVTTTTT STPKLEDFFG GATMGTHYEN NDREAMALSL DSMFYQQNNH HEPNNQNLIN  180
HLQQQQQQQQ QNPRHQEQSV HQVQVQAQQQ QYSYYSGLRG HEMMLEEGHK ETHLAANNYN  240
LQQPRMGLDQ SISEMKSWIS RNYAANHAME QNMIGCMGDN GAESGSIGAM PYGDLQSLSL  300
SMSPGSQSSC VTGSQQISPT VADGVTMDTK KRGPEKVDQK QIVHRKSLDT FGQRTSQYRG  360
VTRHRWTGRY EAHLWDNSCK KEGQSRKGRQ VGKLSKRTGG HEEHDQTRIC CPLKEEKQWI  420
LKRGFNVQRS D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.16e-30AP2 family protein