PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001774.1_g020.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

AP2

Protein Properties

Length: 532aa MW: 56924.7 Da PI: 6.6432

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001774.1_g020.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	22.6	2.7e-07	348	381	1	37
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfg 37 s y+GV+++++ grW A+I + +k +lg+f Pav_sc0001774.1_g020.1.mk 348 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFS 381 57**************988532...5*****96 PP

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence
MGSMNWLGFS LSPQEVVPAD PSISEGDHHH QHHDGHELSD DQTATLVSRL GFKYSDDISG 60 TDVTGGCFDL TSHDDSSATT TAAAVPNNHS HNHLIPPPFG MLHQAAAFNT TNIHSQGADW 120 SNMNSSDSST YKTTSDHLSM LMGSNSSYRS QNLENNHQQP KLENFLGRHS FVADEHHIGG 180 QSSSGTHAYN NNSTSNTIQT LSLSMSTGSH THHNTTSTAA AGETCSSDRD NTCNNNNKLA 240 VVRTTASTAP PPGIDSQTTS TTATAIEAVP RKSVDTFGQR TSIYRGTDGQ VDMKLISGII 300 VAGEKDKLAR EGKISNYEKE IDEMKHMTRQ EYVASLRRKS SGFSRGASIY RGVTRHHQHG 360 RWQARIGRVA GNKDLYLGTF SSNSVMYSTA TTTNGGGGGG GGDHGGYIIP MGTVISNDHN 420 DGFGDGTNHD HQVKAVALGF ENVFGSTSAS VNATNVTRDA YNNHARNLYY LPQQLPQSSS 480 VSSVSSAGVA KGGSAYDIHE AGQCNNWMPT AVPTSTNSNI NMPPTFTVWN DT

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence

MGSMNWLGFS LSPQEVVPAD PSISEGDHHH QHHDGHELSD DQTATLVSRL GFKYSDDISG  60
TDVTGGCFDL TSHDDSSATT TAAAVPNNHS HNHLIPPPFG MLHQAAAFNT TNIHSQGADW  120
SNMNSSDSST YKTTSDHLSM LMGSNSSYRS QNLENNHQQP KLENFLGRHS FVADEHHIGG  180
QSSSGTHAYN NNSTSNTIQT LSLSMSTGSH THHNTTSTAA AGETCSSDRD NTCNNNNKLA  240
VVRTTASTAP PPGIDSQTTS TTATAIEAVP RKSVDTFGQR TSIYRGTDGQ VDMKLISGII  300
VAGEKDKLAR EGKISNYEKE IDEMKHMTRQ EYVASLRRKS SGFSRGASIY RGVTRHHQHG  360
RWQARIGRVA GNKDLYLGTF SSNSVMYSTA TTTNGGGGGG GGDHGGYIIP MGTVISNDHN  420
DGFGDGTNHD HQVKAVALGF ENVFGSTSAS VNATNVTRDA YNNHARNLYY LPQQLPQSSS  480
VSSVSSAGVA KGGSAYDIHE AGQCNNWMPT AVPTSTNSNI NMPPTFTVWN DT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	2e-43	AP2 family protein