PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000823.1_g420.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 349aa    MW: 38524.2 Da    PI: 8.8437
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000823.1_g420.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.56.1e-1722112279
                   trihelix   2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.t 72 
                                Wt  e+++Liea++ ++er  +++             ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk++e e+++ +
  Pav_sc0000823.1_g420.1.mk  22 WTVGETMVLIEAKKMDDERRMKRSgdaagsetrsskPAELRWKWVEDYCWKKGCLRSQNQCNDKWDNLMRDYKKVREYERREgK 105
                                *************96655555432234444445444999*****************************************9733 PP

                   trihelix  73 sessstc 79 
                                +e+ s +
  Pav_sc0000823.1_g420.1.mk 106 EEAASYW 112
                                4444333 PP
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    
MADQGGNGTS SVIMRDYRKG NWTVGETMVL IEAKKMDDER RMKRSGDAAG SETRSSKPAE  60
LRWKWVEDYC WKKGCLRSQN QCNDKWDNLM RDYKKVREYE RREGKEEAAS YWKLEKSERK  120
DRNLPTNMVP QIYEALVDVV EKREAGHHQI RVVGGASVSG SNVPNPTTGY VVERPIIGTS  180
VHQASLPPPV LQHHISVPPI AALPLLPPAP LAVQPPPTLP YSQPMPSVDS ETSHEHSDSP  240
AKRRRRASGG GGGGGDQGTS GTVSASTSSE VGTAISRGAS MIAEALQGCE EREERRHRDL  300
LSLHERRLQI EETKTEINRQ GINGLIDAIN KLADSIHALA SNKNQSPPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.14e-59Trihelix family protein