PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G31310.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 383aa    MW: 42589.1 Da    PI: 9.4992
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G31310.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.96.4e-1919106273
     trihelix   2 WtkqevlaLiearr................emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                  Wt +e+++Liea+r                e ++++r++k ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r +
  AT1G31310.1  19 WTLNETMVLIEAKRmdderrmrrsiglpppEQQQDIRSNKPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERRRVE 106
                  **************5444444444444444444444445699******************************************9844 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.8531191IPR017877Myb-like domain
PfamPF138371.1E-1318106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MADQSGGLVM MREYRKGNWT LNETMVLIEA KRMDDERRMR RSIGLPPPEQ QQDIRSNKPA  60
ELRWKWIEDY CWRKGCMRSQ NQCNDKWDNL MRDYKKVREY ERRRVESSIT AGESSSSSAP  120
AGETASYWKM EKSERKERSL PSNMLPQTYQ ALFEVVESKT LPSSTAVTAV TAAVAAAAAA  180
ISSGNGSGGG QIQKVIQQGL GFVVPKVHQI IQQQPVLLPL QPPPPPPPSQ PLPRPLLLPP  240
PPPPSFHAQP ILPTKDSSTD SDTSEYSDTS PAKRRRTMPT TTTAGPSGGG VDVEEVGRSK  300
RDEETTVAAA LSRSVSVIAN AIRESEERQD RRHKEVMNVQ ERRLKIEESN VEMNREGMNG  360
LVEAINKLAS SIFALASSSR HNN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13140RMDDERRMRR
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO425624340.0
Genevisible262550_at0.0
Expression AtlasAT1G31310-
AtGenExpressAT1G31310-
ATTED-IIAT1G31310-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G31310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G31310
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293840.0AK229384.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-62-O19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_174416.20.0hydroxyproline-rich glycoprotein family protein
TrEMBLF4I9C10.0F4I9C1_ARATH; Hydroxyproline-rich glycoprotein family protein
STRINGAT1G31310.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Representative plantOGRP18811637
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]