PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000129.1_g140.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 1563aa MW: 173857 Da PI: 6.9053

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000129.1_g140.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	6.1e-12	1371	1415	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f++L++llP+ +K +Ka++L+ A eY+ sL Pav_sc0000129.1_g140.1.mk 1371 HMISERKRREKLNESFHTLKSLLPPG-----TKKDKASVLTTAREYLTSL 1415 7889******************97.....8*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 1563 aa Download sequence
MRSISPRTLY CLSSSSLSPP FLQISHFSTS SPAHHFHSNY SFRRHDEDVR NVRISVWWDF 60 ENCHLPAGVN VFKVAHAITA AIRANGIKGP IQITAFGDML QLSRANQEAL SSTGVNLTHV 120 PHGGKNSADR SLLVDLMYWV SQNPPPAHLF LISGDRDFAS ILHRLRMNNY NILLASPENA 180 PGVLCSAASI MWPWHALLTG ENLTGKYFNQ PPDGPYGSWY GHYKVPIEDP YSVVEPPAQS 240 QTEKLSEPGS DSKPRPIPTA VMKQIRQILK SHPKGIPITD LRMELGKCKL SIDRDFYGYK 300 KFSRFLLSIP HILKVQSLGD GNFLVRGGSE KSSEPCQSNL DMSTESFGDN GGQDLSLASQ 360 LDCEDKSINV GANRKLSSPV SHESNVEDPN RELQQPFSPK SDGKSILPPS PENVKSSAKP 420 QLSALDEKSP STPCTENVKT SVPIDGNVVE VAKEQDNELH FLPAVAQGSS SEVGYFKWIW 480 RQWFGYRGNV SGTRSHDGQE DHYTSGNVTE KEGHDTPVKQ YTSVGNSGQR KDKEKLVGST 540 SQVVDQAPHV SSSSSYNESE KDNKTATSYE VYANKSKTSQ GFFDQIVNWC KFWRSSPCSD 600 KLSDQSCDRP NLMNTHSQEH MLFSTDSFWR DMESFMDTPK VSVLASESRT REQMALNLQK 660 EGPLFLRSLS KGDLVHLVDL LISEKKWVEE SPSQTSPFKL TYRDGKSSLD HSNDTNRSTS 720 IFLNKPSQHD IQRSREHDGE EKCRNIPHSG VSLPAIKKKP SDRCRIDIIA DCQKLVNEIL 780 KEYPEGYNMV LFRKLFLDRY GYHLDLHMLG YEKLASLLQM MPGVKVESSY IVPACKTPKM 840 FDMDSYVHNI QKQTVSHTMA NSDSELSDAS TKDDVSNSPW EELGPVANTS EKNEVEVASR 900 RKAIGSTGFD YEPSLSDDLS DSEGETSPLT ELEGEGAARV NKEDSSLLQI LDSWYSGKDG 960 GSSKDRSENF EGLVDFTNVS KLSVSSGVGP MSGTYSGNQA RKQRPQKNYS FVADSGENKD 1020 KLIDGIVVAR NGPTDTGIKR YTEAVLSENQ PSSSSGNQAR RLFDEYRQSI FNVVENECVP 1080 GFAFRNSLPN LELQEIELQR LASSGVQRRF YQTAVFMGCK SGEIELGLSN VPQINIKREM 1140 MRNWLPEAFS RQLSPHTAVA NRPNNPDQQN PLSSSSSSFR SLSTMDSPEY SSLLFNIPTT 1200 TTTSSHINIP DVFTQPAPNP LQPINIVTSL EPMPPLNIIS SSITSPHQQA LRAFSRIRNT 1260 QFPAPEIEDA AMTRAILAVL SSSSPSSSSS HQPPPQTNVP PSSSTAHFLT PNTSAFKTYN 1320 SSPLAPRTQT SANVRKQIML KRSISFLRSL NLMRLREGIQ ATRPTSSQLH HMISERKRRE 1380 KLNESFHTLK SLLPPGTKKD KASVLTTARE YLTSLRAQVA ELSKRNQQLE ARLPPAAKEA 1440 YNEEAAAAAG SSNERVSVTL TRVVSESTPD QDQQIFDLQV VLRSVECCTE DMVIRILEFL 1500 KQVNNVSLMS MEANTWMSGS DSNVNRVILR LRVDQGTEWD EAAFQEAVRR VVADLALNNC 1560 RNQ

Sequence ? help Back to Top

Protein Sequence Length: 1563 aa Download sequence

MRSISPRTLY CLSSSSLSPP FLQISHFSTS SPAHHFHSNY SFRRHDEDVR NVRISVWWDF  60
ENCHLPAGVN VFKVAHAITA AIRANGIKGP IQITAFGDML QLSRANQEAL SSTGVNLTHV  120
PHGGKNSADR SLLVDLMYWV SQNPPPAHLF LISGDRDFAS ILHRLRMNNY NILLASPENA  180
PGVLCSAASI MWPWHALLTG ENLTGKYFNQ PPDGPYGSWY GHYKVPIEDP YSVVEPPAQS  240
QTEKLSEPGS DSKPRPIPTA VMKQIRQILK SHPKGIPITD LRMELGKCKL SIDRDFYGYK  300
KFSRFLLSIP HILKVQSLGD GNFLVRGGSE KSSEPCQSNL DMSTESFGDN GGQDLSLASQ  360
LDCEDKSINV GANRKLSSPV SHESNVEDPN RELQQPFSPK SDGKSILPPS PENVKSSAKP  420
QLSALDEKSP STPCTENVKT SVPIDGNVVE VAKEQDNELH FLPAVAQGSS SEVGYFKWIW  480
RQWFGYRGNV SGTRSHDGQE DHYTSGNVTE KEGHDTPVKQ YTSVGNSGQR KDKEKLVGST  540
SQVVDQAPHV SSSSSYNESE KDNKTATSYE VYANKSKTSQ GFFDQIVNWC KFWRSSPCSD  600
KLSDQSCDRP NLMNTHSQEH MLFSTDSFWR DMESFMDTPK VSVLASESRT REQMALNLQK  660
EGPLFLRSLS KGDLVHLVDL LISEKKWVEE SPSQTSPFKL TYRDGKSSLD HSNDTNRSTS  720
IFLNKPSQHD IQRSREHDGE EKCRNIPHSG VSLPAIKKKP SDRCRIDIIA DCQKLVNEIL  780
KEYPEGYNMV LFRKLFLDRY GYHLDLHMLG YEKLASLLQM MPGVKVESSY IVPACKTPKM  840
FDMDSYVHNI QKQTVSHTMA NSDSELSDAS TKDDVSNSPW EELGPVANTS EKNEVEVASR  900
RKAIGSTGFD YEPSLSDDLS DSEGETSPLT ELEGEGAARV NKEDSSLLQI LDSWYSGKDG  960
GSSKDRSENF EGLVDFTNVS KLSVSSGVGP MSGTYSGNQA RKQRPQKNYS FVADSGENKD  1020
KLIDGIVVAR NGPTDTGIKR YTEAVLSENQ PSSSSGNQAR RLFDEYRQSI FNVVENECVP  1080
GFAFRNSLPN LELQEIELQR LASSGVQRRF YQTAVFMGCK SGEIELGLSN VPQINIKREM  1140
MRNWLPEAFS RQLSPHTAVA NRPNNPDQQN PLSSSSSSFR SLSTMDSPEY SSLLFNIPTT  1200
TTTSSHINIP DVFTQPAPNP LQPINIVTSL EPMPPLNIIS SSITSPHQQA LRAFSRIRNT  1260
QFPAPEIEDA AMTRAILAVL SSSSPSSSSS HQPPPQTNVP PSSSTAHFLT PNTSAFKTYN  1320
SSPLAPRTQT SANVRKQIML KRSISFLRSL NLMRLREGIQ ATRPTSSQLH HMISERKRRE  1380
KLNESFHTLK SLLPPGTKKD KASVLTTARE YLTSLRAQVA ELSKRNQQLE ARLPPAAKEA  1440
YNEEAAAAAG SSNERVSVTL TRVVSESTPD QDQQIFDLQV VLRSVECCTE DMVIRILEFL  1500
KQVNNVSLMS MEANTWMSGS DSNVNRVILR LRVDQGTEWD EAAFQEAVRR VVADLALNNC  1560
RNQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1375	1380	ERKRRE
2	1376	1381	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	7e-69	bHLH family protein