PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO01744.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB
Protein Properties Length: 320aa    MW: 35452.5 Da    PI: 7.6886
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO01744.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.5e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+++++++G+g +W + ++++g++R++k+c++rw++yl
       POO01744.1 14 KGPWSPEEDAKLKEYIEKYGTGgNWIALPQKVGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding431e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd +++++++  G++ W+ Ia+ ++ gRt++++k++w++
       POO01744.1  69 GEFSDEEDRIIINLFANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MGRAPCCDKT NVKKGPWSPE EDAKLKEYIE KYGTGGNWIA LPQKVGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIII NLFANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMNI  120
INPPPGLRKL PQTASISSLL QHSSSSSLSS SSSSTSSSSS PSSFCGQAGS FTTTGYEPIS  180
AFSSNTILHV KQESYLGQMP YYQVNKDSLQ QLMFGTGDQA SCSSSDGSCN NEQALLQNNN  240
FFHNGVDQNH HQNVMLSNGD TINVNGNGLW GSEQALLDCF GLEEIKQLIS SSTNTTTTSS  300
CSNFLFDENK TTEERVLYYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-77MYB family protein