PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO01315.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB_related

Protein Properties

Length: 649aa MW: 72002.1 Da PI: 10.5744

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO01315.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.3	4.8e-10	10	57	2	44
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrw 44 ++W t E++ll++av+++G+++W++Ia ++ +t+ +c++++ POO01315.1 10 QPWGTLEELLLACAVNRHGTESWDSIAMELAnrttsAALTPDSCRHKF 57 79*****************************88888778888898887 PP

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence
MAREHETSVQ PWGTLEELLL ACAVNRHGTE SWDSIAMELA NRTTSAALTP DSCRHKFDDL 60 KRRFMPPNDD ESASFLPMVD ELKKIRVEEL RREVRRRDVS IVSLELKVKR LEEERERSLR 120 GSRPESAGPD SRKKNLEGGG AAGGLTSSPE NRADGKSNSG DASNRSFNES NSTSQKRGDS 180 QRNDGVVVVN GEAGPEPERN ELSDPPRTET EPGKVVDGDD DNNNNNNDDN KNNSNNNNEK 240 DNTKQSSDVQ SSMSLSRKKR RRRRGGSAAA AAAAGSSSGE EPEAEGDEVS PATTKRVSAL 300 KSEPLVKLLG TIRSHRLGSV FQRRLRSQES QRYKNLIRQH LDLQTIQARL EKGVYSNSFH 360 KFFRDLLLLF NNAIVFFRKS SPEHAAALEL RALVSKEMHA KLGKTRPFTA KPEPTKEIDL 420 ASKPSKSSIV VKCGNRSSSK AVSEGVNKKG DTKKESRVVE EKQKASEKKI NGSFVAIEDK 480 GIRKKRSQER VGRRGLKTGG KGGESEHEFG GNELSSHDAL EVKADKKENA KKKQGVANFL 540 KRMKQNSPKE AEDEIDTDVS EDDSEDSKVG KEEKKKKGAK VRSDERKERI TRNSTRGRGT 600 RDDSRKAKRG VGRPPKRPEK VAVASGKRGR DNSEPEVGIG GRLKKRSRR

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence

MAREHETSVQ PWGTLEELLL ACAVNRHGTE SWDSIAMELA NRTTSAALTP DSCRHKFDDL  60
KRRFMPPNDD ESASFLPMVD ELKKIRVEEL RREVRRRDVS IVSLELKVKR LEEERERSLR  120
GSRPESAGPD SRKKNLEGGG AAGGLTSSPE NRADGKSNSG DASNRSFNES NSTSQKRGDS  180
QRNDGVVVVN GEAGPEPERN ELSDPPRTET EPGKVVDGDD DNNNNNNDDN KNNSNNNNEK  240
DNTKQSSDVQ SSMSLSRKKR RRRRGGSAAA AAAAGSSSGE EPEAEGDEVS PATTKRVSAL  300
KSEPLVKLLG TIRSHRLGSV FQRRLRSQES QRYKNLIRQH LDLQTIQARL EKGVYSNSFH  360
KFFRDLLLLF NNAIVFFRKS SPEHAAALEL RALVSKEMHA KLGKTRPFTA KPEPTKEIDL  420
ASKPSKSSIV VKCGNRSSSK AVSEGVNKKG DTKKESRVVE EKQKASEKKI NGSFVAIEDK  480
GIRKKRSQER VGRRGLKTGG KGGESEHEFG GNELSSHDAL EVKADKKENA KKKQGVANFL  540
KRMKQNSPKE AEDEIDTDVS EDDSEDSKVG KEEKKKKGAK VRSDERKERI TRNSTRGRGT  600
RDDSRKAKRG VGRPPKRPEK VAVASGKRGR DNSEPEVGIG GRLKKRSRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	257	263	RKKRRRR
2	258	263	KKRRRR
3	258	264	RKKRRRR
4	259	264	KKRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	5e-38	MYB_related family protein