PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO01147.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 367aa MW: 41423.1 Da PI: 7.9548

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO01147.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.7e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl POO01147.1 14 KGPWSPEEDSKLKEYIEKHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	40.8	5.3e-13	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd ++ ++++ G++ W+ Ia+ ++ gRt++++k++w++ POO01147.1 69 GEFSDEEDRIICNLFANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDSKLKEYIE KHGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSDEEDRIIC NLFANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGL 120 VPPISQRKIP LPFPNSSHEI PTSTTYNQPL LSSSSSLYRS FSSGLEHQMS NIILSSTYPN 180 PTTGTTTTSL NFQTQMQEKY LVGGTSTTTT TNNPIQYNYI PVKDNNILVF GSDQGRSCSS 240 SSDGSCNQIS YVGGCRELKQ EEQIMGFRHH HQGYNINMAN FNGFEEQMMI NYENHHNLWG 300 EKSNGYFGES SLEKYCGLGD ENDHFKQLIS SSSNSNNPSI INSYDSNNNY GYGNIDENKT 360 QDKVMYF

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDSKLKEYIE KHGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIC NLFANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGL  120
VPPISQRKIP LPFPNSSHEI PTSTTYNQPL LSSSSSLYRS FSSGLEHQMS NIILSSTYPN  180
PTTGTTTTSL NFQTQMQEKY LVGGTSTTTT TNNPIQYNYI PVKDNNILVF GSDQGRSCSS  240
SSDGSCNQIS YVGGCRELKQ EEQIMGFRHH HQGYNINMAN FNGFEEQMMI NYENHHNLWG  300
EKSNGYFGES SLEKYCGLGD ENDHFKQLIS SSSNSNNPSI INSYDSNNNY GYGNIDENKT  360
QDKVMYF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	4e-76	MYB family protein