PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON99527.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MIKC_MADS

Protein Properties

Length: 270aa MW: 30710.3 Da PI: 8.8069

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON99527.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.6	3.4e-28	34	84	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien++nrqvt+skRrngi+KKA EL vLCda+v++i++ss++k++ey+s PON99527.1 34 KLIENQTNRQVTYSKRRNGIFKKARELTVLCDAKVSLIMISSNNKIHEYAS 84 569**********************************************86 PP
2	K-box	82.4	1.1e-27	96	194	1	99
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 yq+++g +l+++++e++qq +++Lk+++ +L+re+R++lG dL++L++ eL+ Le+ + +s + iR++K++ +++q+++++kk k+l+e+n++L +k+ PON99527.1 96 YQTTTGIDLWKTQYETMQQTFEQLKERNYKLRREIRQRLGLDLSDLDFSELKALEDSMASSSEAIRERKTQKIKTQTDTTKKKVKSLEERNTSLVHKIH 194 78999999****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence
MSNYKSELSV EEEEADHHHQ DTKPKMGRGK IQIKLIENQT NRQVTYSKRR NGIFKKAREL 60 TVLCDAKVSL IMISSNNKIH EYASPGTSTK DMIDMYQTTT GIDLWKTQYE TMQQTFEQLK 120 ERNYKLRREI RQRLGLDLSD LDFSELKALE DSMASSSEAI RERKTQKIKT QTDTTKKKVK 180 SLEERNTSLV HKIHAKYEDP PYGLVEDDGG YESAVALAGA SNLYSFRHHH QSSHSALHSG 240 GGSIITTSHS ALHNGGGSYD SFDLRDLRLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	4e-69	MIKC_MADS family protein