PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON97967.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 401aa MW: 44882.7 Da PI: 6.2613

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON97967.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.7	8.4e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++++ G+g +W + ++++g++R++k+c++rw++yl PON97967.1 14 KGPWSPEEDAKLKAYIEKNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	37.3	6.5e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ PON97967.1 69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE KNGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR 120 RKQSNGTRLS LSATNPDLTK DPTGLLEDSE TLSSSALERL QLHMQLQSLQ NPLSFYNNPA 180 LWPKLHPFQQ KMIQSFQSLN ANPNPNPDPN LNPLIMQHNL VTSPNQGHHD HQPAGQGQKV 240 DFYEPSSVNI AVHEGQEEYT RTGNNDSAKI IEGSENCKED AFACGVGVQQ SDPDHEIGRI 300 HQVSAFQAEL EDILNGDKGS ISFLPQGDHD HDHQVGDELD CFKEMNNVSK DSFIWWSNEF 360 DAKSSSSNSW DSTSAALDHH QSSIGTHNGI FHDYDQLNYG L

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE KNGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR  120
RKQSNGTRLS LSATNPDLTK DPTGLLEDSE TLSSSALERL QLHMQLQSLQ NPLSFYNNPA  180
LWPKLHPFQQ KMIQSFQSLN ANPNPNPDPN LNPLIMQHNL VTSPNQGHHD HQPAGQGQKV  240
DFYEPSSVNI AVHEGQEEYT RTGNNDSAKI IEGSENCKED AFACGVGVQQ SDPDHEIGRI  300
HQVSAFQAEL EDILNGDKGS ISFLPQGDHD HDHQVGDELD CFKEMNNVSK DSFIWWSNEF  360
DAKSSSSNSW DSTSAALDHH QSSIGTHNGI FHDYDQLNYG L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	1e-94	MYB family protein