PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON95062.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

bHLH

Protein Properties

Length: 502aa MW: 55244.1 Da PI: 5.4081

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON95062.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.7	8.8e-13	357	403	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq PON95062.1 357 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 403 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MGEKFWANVE DKVMVESVVG TEACQFLISL ASDNVLSGFV TPAADLGVQQ GLCQLVEGSN 60 WNYAIFWRVV SSKSCGSALI WGDGHCRNPK GGGAGDKIAS EDGNFEGGEK KEQVKKRVLE 120 KLYACFGGSD EDNYASKLDG VSDLEMFYLT SMYYKFQLDS LSGPGESYKS GKAIWAFDAS 180 NCSHHYQSRS FLARVAGFQT VVFVPVTSGV VELGTFKSTP EEQSVVDMVK NIFGVGSSSS 240 SQSTTKAFPK IFGHELSLGG TKSQSVNINF SPKVEDDSAF PSESFDLQAI GSSNGRSESS 300 EIKLFPQLNQ MIVGGFNAQT RVSGMELPKD DALPQLDERK PRKRGRKPAN GREEPLNHVE 360 AERQRREKLN QRFYALRAVV PNISKMDKAS LLGDAITYIT DLQAKIRVME TEKQMVTNKQ 420 QFSVPDIDFQ SRQEDAVVRM SCPLDAHPVS NVIKMLREHQ IVAQESDVST DENDRIVHTF 480 SVQTQGADAE QLKEKLLAAL SN

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MGEKFWANVE DKVMVESVVG TEACQFLISL ASDNVLSGFV TPAADLGVQQ GLCQLVEGSN  60
WNYAIFWRVV SSKSCGSALI WGDGHCRNPK GGGAGDKIAS EDGNFEGGEK KEQVKKRVLE  120
KLYACFGGSD EDNYASKLDG VSDLEMFYLT SMYYKFQLDS LSGPGESYKS GKAIWAFDAS  180
NCSHHYQSRS FLARVAGFQT VVFVPVTSGV VELGTFKSTP EEQSVVDMVK NIFGVGSSSS  240
SQSTTKAFPK IFGHELSLGG TKSQSVNINF SPKVEDDSAF PSESFDLQAI GSSNGRSESS  300
EIKLFPQLNQ MIVGGFNAQT RVSGMELPKD DALPQLDERK PRKRGRKPAN GREEPLNHVE  360
AERQRREKLN QRFYALRAVV PNISKMDKAS LLGDAITYIT DLQAKIRVME TEKQMVTNKQ  420
QFSVPDIDFQ SRQEDAVVRM SCPLDAHPVS NVIKMLREHQ IVAQESDVST DENDRIVHTF  480
SVQTQGADAE QLKEKLLAAL SN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	339	347	RKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	1e-169	bHLH family protein