PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON93861.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family ARF
Protein Properties Length: 958aa    MW: 105431 Da    PI: 4.8346
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON93861.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.85.5e-25147248199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+        + ++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F   ++++ +l
  PON93861.1 147 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytM-QPPN-QELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFI--RDEKSQL 241
                 99*********************999*****954.5444.49************************************************..4577778 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+++r+
  PON93861.1 242 MVGIRRA 248
                 *****97 PP
2Auxin_resp114.31.1e-37273356183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+++YnPra+++eFv+++ k++ka++ +++svGmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
  PON93861.1 273 AAHAAANRSTFTIFYNPRACPAEFVIPLTKFRKAVYaTQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 356
                 79*********************************989********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 958 aa     Download sequence    
MGSVEEKIKN GGLVTGAPTN LLEEMKMLKE MQDQNGSRKT ISSELWHACA GPLVSLPQVG  60
SLVYYFPQGH SEQVAVSTKR TATSQIPNYP NLPSQLLCQV QNVTLHADRE TDEIYAQMSL  120
QPVNSEKDVF PVPDFGLKPS KHPSEFFCKT LTASDTSTHG GFSVPRRAAE KLFPPLDYTM  180
QPPNQELVVR DLHENTWTFR HIYRGQPKRH LLTTGWSLFV GAKRLRAGDS VLFIRDEKSQ  240
LMVGIRRANR QQSTLPSSVL SADSMHIGVL AAAAHAAANR STFTIFYNPR ACPAEFVIPL  300
TKFRKAVYAT QLSVGMRFGM MFETEESGKR RYMGTIVGIS DLDPLRWPGS KWRNLQVEWD  360
EPGCCDKQNR VSSWEIETPE SLFIFPSLTS GLKRPFHPGY LETDWGNLIK RPFIRVPENG  420
NGDLPYSISS LYSEQLMKML LKPQLVNYPG TLSSLQQESA AAKADPLRDV KLMQAALNQK  480
DQVICSESTS LQQNQVNPQS SLDQSGVSNL NASPNANLHG NFNTAAKLEN QKAGAFISSE  540
KTKSETELST DQLSQLTTTT VHSSEDKLAA GLVNPQGLVN QLTLLNQNQN QNQNQNLGPV  600
QLQTNQWALQ PQLESLLYLS QQADLNPSDM TSTNVSLPSL DPDECMFYPS CHPYPAGILR  660
SPGSLPVFGF QDSSAFPETN NLPLPSMGQD MWDNSNLKVQ AEQLTSFAQQ EPCNFNSVSN  720
SSSLRDLSDE SNNQSGIYSC ANIDGSNGGS IVVDPSASST ILDEFSTLKN VDFQNPSDCL  780
VGNFSTSQDV QSQITSASLG DSQAFSRQDI QDNSGGTSSS NVDLDDSSLL QNNNSWQQVV  840
PPVRTYTKVQ KAGSVGRSID VSSFKNYDEL CSAIECMFGL EGLLNDPRGS GWKLVYVDYE  900
NDVLLVGDDP WEEFVGCVRC IRILSPSEVQ QMSEEGMKLL NSAAMQGMNG SITESGRA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein