PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON88797.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB
Protein Properties Length: 303aa    MW: 34543.9 Da    PI: 8.8669
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON88797.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.7e-182067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l++ ++++G g+W++++++ g+ R++k+c++rw +yl
       PON88797.1 20 RGLWSPEEDEKLLRHITKYGHGCWSSVPKHAGLERCGKSCRLRWINYL 67
                     788*******************************************97 PP
2Myb_DNA-binding46.77.3e-1573116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +++eE+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++
       PON88797.1  73 RGTFSAEEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 116
                      899*******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MGRQRQRQRQ SCCYKQKLRR GLWSPEEDEK LLRHITKYGH GCWSSVPKHA GLERCGKSCR  60
LRWINYLRPD LKRGTFSAEE ENLIIELHAV LGNRWSQIAA QLPGRTDNEI KNLWNSCLKK  120
KLRQRGIDPL THQLIIPAQP KPCFINYQHH GYDSITTATA CATTTTSTSA VVHQNKNSPC  180
SSSPALNYAP RSHESAIINN NNNYNNFVVP CTESAASSSI VIPPMQVAWQ MDDNDPQLTG  240
ACAADYRDIQ YQHVNVNHNH NHNHNHNHVM MGTQPPDELI KWAEYLTNPT TFLTFPAFKT  300
HIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118124LKKKLRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.31e-83MYB family protein