PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON84416.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

bHLH

Protein Properties

Length: 606aa MW: 67407.8 Da PI: 6.8058

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON84416.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.3	1.3e-13	412	456	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR++iN++f+ Lr+llP+ +K +Ka++L ++eY++sL PON84416.1 412 HMISERKRREKINESFQSLRSLLPPG-----TKKDKASVLNTTTEYLNSL 456 8899******************97.....8*************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence
MDAAFNLDDN YRANFLRVLM QSLGCTYISI WKYNPSNYFL FFLDGLYHED TNTQLPSSSS 60 GSLARRLFDE YSQSVILGVA ENDQVPGLAF RNSTPYLELQ ELDLRRLASN DTQRQFYQTA 120 VFMGCKIGEI ELGLSNVPQM NMKMELRSWF PEAFPSQTQL GIDQDNIIPS QTQLAEQINP 180 IRPPTDNQKP LAASSSSSSL RSLSMDNSPE YSSLLFNINN PTTTTPPPNT TSPHNAINIS 240 QAELQIDPNN IPLLMQPLLP SHEPLMILPH QQAMQAFARL RNVQFPTPET EDAAMTKAIL 300 AVLTSASAYN PASSSSSSAN YSADHPHHHL INPKSSAFKN YDSTSTTPSA SALDRHRLSL 360 KKGLFKRSVS FFRSLNLMRN RQRLQAAAAT AAAAAAASAT TYRPTTSTQL HHMISERKRR 420 EKINESFQSL RSLLPPGTKK DKASVLNTTT EYLNSLKAQV EELSRRNKQL EAQVLSQAPA 480 GIRLTEANKN GHSIIDSSST SDHQRVDVRI IRHVSESTSE AAELVIDLQV ILRAAIPVDD 540 LVLRILEFLK TDENVSLMSM DANTHLTESS STSLNRVTLR LRVEGSEWDE SAFQEAVRRV 600 VADLAQ

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence

MDAAFNLDDN YRANFLRVLM QSLGCTYISI WKYNPSNYFL FFLDGLYHED TNTQLPSSSS  60
GSLARRLFDE YSQSVILGVA ENDQVPGLAF RNSTPYLELQ ELDLRRLASN DTQRQFYQTA  120
VFMGCKIGEI ELGLSNVPQM NMKMELRSWF PEAFPSQTQL GIDQDNIIPS QTQLAEQINP  180
IRPPTDNQKP LAASSSSSSL RSLSMDNSPE YSSLLFNINN PTTTTPPPNT TSPHNAINIS  240
QAELQIDPNN IPLLMQPLLP SHEPLMILPH QQAMQAFARL RNVQFPTPET EDAAMTKAIL  300
AVLTSASAYN PASSSSSSAN YSADHPHHHL INPKSSAFKN YDSTSTTPSA SALDRHRLSL  360
KKGLFKRSVS FFRSLNLMRN RQRLQAAAAT AAAAAAASAT TYRPTTSTQL HHMISERKRR  420
EKINESFQSL RSLLPPGTKK DKASVLNTTT EYLNSLKAQV EELSRRNKQL EAQVLSQAPA  480
GIRLTEANKN GHSIIDSSST SDHQRVDVRI IRHVSESTSE AAELVIDLQV ILRAAIPVDD  540
LVLRILEFLK TDENVSLMSM DANTHLTESS STSLNRVTLR LRVEGSEWDE SAFQEAVRRV  600
VADLAQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	416	421	ERKRRE
2	417	422	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	2e-75	bHLH family protein