PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PON71538.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 272aa MW: 31135.9 Da PI: 8.901 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.5 | 3.5e-28 | 34 | 84 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien++nrqvt+skRrngi+KKA EL vLCda+v++i++ss++k++ey+s PON71538.1 34 KLIENQTNRQVTYSKRRNGIFKKARELTVLCDAKVSLIMISSNNKIHEYAS 84 569**********************************************86 PP | |||||||
2 | K-box | 81.6 | 1.8e-27 | 96 | 194 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 yq+++g +l+++++e++qq +++Lk+++ +L+re+R++lG dL++L++ eL+ Le+ + +s + iR++K++ +++q+++++kk k+l+e+n++L +k+ PON71538.1 96 YQTTTGIDLWKTQYETMQQTFEQLKERNYKLRREIRQRLGLDLSDLDFSELKALEDSMASSSEAIRERKMQKIKTQTDTTKKKVKSLEERNTSLVHKIH 194 78999999****************************************************************************************986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 272 aa Download sequence |
MSNYKSEWSV EEEETDHHHQ DTKQKMGRGK IQIKLIENQT NRQVTYSKRR NGIFKKAREL 60 TVLCDAKVSL IMISSNNKIH EYASPGSCTK DMIDMYQTTT GIDLWKTQYE TMQQTFEQLK 120 ERNYKLRREI RQRLGLDLSD LDFSELKALE DSMASSSEAI RERKMQKIKT QTDTTKKKVK 180 SLEERNTSLV HKIHAKYEDP PYGLVEDDGG YESAVALAGA SNLYSFRHRH HHQSSHSALH 240 SGGGSIITTS HSALHNGGGS YDSLDLRDLR LA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54340.1 | 3e-68 | MIKC_MADS family protein |