PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PON56009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 25625.1 Da PI: 6.0906 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.9 | 1.6e-15 | 60 | 111 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr++k g+Wv+e+r p k+ r +lg+f ++++Aa+a++ a+++ +ge PON56009.1 60 PVYRGVRQRK--GKWVCELRQP---HsKNSRLWLGTFPSPDMAARAYDVAALAVRGE 111 68****9987..******9995...2245***********************99986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence |
MNFTTEESSS SSSTSSSGHV NIVSGNKPST ATTTNTSSTV NSRQQKRKSG RKKFQETRHP 60 VYRGVRQRKG KWVCELRQPH SKNSRLWLGT FPSPDMAARA YDVAALAVRG ESASLNFPES 120 VMREHPQQVI DSPSSTSSAA AVADHHEVVV HHDQGQRARS TTDDQASSLA PCMEAAEESR 180 NIAYLDEEEL FNMPELLDSM AEGLILTPPG MQKGFSWDDY SSGDSVDFAL WTD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25470.1 | 1e-30 | ERF family protein |