PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON42177.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family LBD
Protein Properties Length: 239aa    MW: 24406.6 Da    PI: 7.7825
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON42177.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.56.1e-40311311100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l++el++l+
  PON42177.1  31 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTVCYEAQARLRDPVYGCVAHIFALQQQVVSLQTELSYLQ 129
                 7***********************9989********************************************************************999 PP

      DUF260  99 ee 100
                 ++
  PON42177.1 130 AH 131
                 86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MSANPSSSTS GGGGSSGSGG GCGGGGGGSG PCGACKFLRR KCVAGCIFAP YFDSEQGAAH  60
FAAVHKVFGA SNVSKLLLHI PVHKRLDAVV TVCYEAQARL RDPVYGCVAH IFALQQQVVS  120
LQTELSYLQA HLATLELPSP PPVPPPPTTL ITPPLSIADL PSASSVPATY DLSSLFEPIV  180
QPWAMQQRPL DPRQFGGATG SSSGSGGGDL QALARELLHR HGSPPHGSVP CSDGSSPSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.17e-77LBD family protein