PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA61131.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

LBD

Protein Properties

Length: 278aa MW: 27621.2 Da PI: 9.1558

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA61131.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117	1.1e-36	33	120	1	87
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll+++p ++r da+ +++yeA+ r+rdPvyG+v++i++lqqq PKA61131.1 33 PCGACKFLRRKCVSGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLRNIPAHKRLDAVVTICYEAQSRLRDPVYGCVAHIFALQQQA 120 7*********************9989*******************************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence
MSAGSASSSG PGAAASGSGS GSGGSGIGGG GGPCGACKFL RRKCVSGCIF APYFDSEQGA 60 AHFAAVHKVF GASNVSKLLR NIPAHKRLDA VVTICYEAQS RLRDPVYGCV AHIFALQQQA 120 IHRYTSSSFL PYSSIGGEPT GGALLLAGPP GDAGAPLAAA TAAAAATGCY YLAAACLLDA 180 GATILVGLSG DFRPVGSLRS PPARAAAAAD GAPAGPASPA RSGEDNGRKL FGGRRRGRGP 240 AGSCEGADRP APVGFFSRRP ADIAEVALII ISSIFERL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	6e-49	LBD family protein