PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA56548.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 381aa MW: 42627.1 Da PI: 7.8203

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA56548.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.1	7.4e-06	210	229	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r n++ H+ PKA56548.1 210 FSCPVCSKTFNRYNNMQMHM 229 89*****************9 PP
2	zf-C2H2	14.4	0.00011	294	316	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ PKA56548.1 294 FMCRKCGKAFAVRGDWRTHEKNC 316 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MADPYPNFFN RLSFNYHPFS PPNPPPPPPP PPPHPPSPLL PPPPSFLPSF NFYSHYNYNL 60 HNNHLHHLQS PPPSPPLKEA LPLLRLSPKD NNTDDNDDDD DNTSCSAVVG DSRRNPKGKL 120 YQLAGKEGVE DEADAVTVAL HIGLPSPTAA DLISRISTAT VADDSGCVGE DEDGSAALQI 180 PLGCPTIGKL NKGQYWIPTP SQILIGPTQF SCPVCSKTFN RYNNMQMHMW GHGSQYRKGP 240 ESLRGTQPTA MLRLPCYCCS PGCRNNIDHP RSKPLKDFRT LQTHYKRKHG IKPFMCRKCG 300 KAFAVRGDWR THEKNCGKLW YCTCGSDFKH KRSLKDHIRA FGHGHAAYGI DCFEEDDDPA 360 SEIEQEIKEQ MLSRRGDQQR L

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MADPYPNFFN RLSFNYHPFS PPNPPPPPPP PPPHPPSPLL PPPPSFLPSF NFYSHYNYNL  60
HNNHLHHLQS PPPSPPLKEA LPLLRLSPKD NNTDDNDDDD DNTSCSAVVG DSRRNPKGKL  120
YQLAGKEGVE DEADAVTVAL HIGLPSPTAA DLISRISTAT VADDSGCVGE DEDGSAALQI  180
PLGCPTIGKL NKGQYWIPTP SQILIGPTQF SCPVCSKTFN RYNNMQMHMW GHGSQYRKGP  240
ESLRGTQPTA MLRLPCYCCS PGCRNNIDHP RSKPLKDFRT LQTHYKRKHG IKPFMCRKCG  300
KAFAVRGDWR THEKNCGKLW YCTCGSDFKH KRSLKDHIRA FGHGHAAYGI DCFEEDDDPA  360
SEIEQEIKEQ MLSRRGDQQR L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-132	C2H2 family protein