PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA55255.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

TCP

Protein Properties

Length: 312aa MW: 32418.2 Da PI: 8.7837

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA55255.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.2	3e-38	67	157	2	95
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaksaa 95 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+ +tg+++++as+ ++ +++++ +aa+s+ PKA55255.1 67 APKRSTNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIISATGSGTIPASALavA-AAAAVTGGA----AAAPSSI 157 789******************************************************************777431.222222221....1111111 PP

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence
MEFKGSSKLP AEQPKFLLQN PDKRDNQRDG NRELQMVISS SASGAEKELP LAPSSTPEKD 60 DQRKQLAPKR STNKDRHTKV DGRGRRIRMP ALCAARIFQL TRELGHKSDG ETIQWLLQQA 120 EPSIISATGS GTIPASALAV AAAAAVTGGA AAAPSSISHP SASAAAAAAA AAARPNWASG 180 IWQPPPVVGF GCSGFLPPTT TLSGAAGEGS AGGFMQRIGL QGIELPGANL GQMSFASMLG 240 GPSQPLPGLE LGLSQDGHIG VLNPQALSQF YHHMGQGRGG GTGDHLQHHH QHHQHHHSQG 300 SLGKDDSEGS SH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	5e-61	TCP family protein